X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGDesktop.java;h=b0079b4c121089bfc9e93fc59e016c46dd12d00d;hb=51909770452369f94b4a0070482ab0acdd96fada;hp=996cb1fdaee0f5fee73820e6bd38da98537dd950;hpb=64593426f7198a007ac3529c75c036e29858a9c8;p=jalview.git

diff --git a/src/jalview/jbgui/GDesktop.java b/src/jalview/jbgui/GDesktop.java
index 996cb1f..b0079b4 100755
--- a/src/jalview/jbgui/GDesktop.java
+++ b/src/jalview/jbgui/GDesktop.java
@@ -32,6 +32,8 @@ import javax.swing.JMenuItem;
 
 import jalview.api.AlignmentViewPanel;
 import jalview.bin.Cache;
+import jalview.gui.APQHandlers;
+import jalview.gui.Desktop;
 import jalview.io.FileFormatException;
 import jalview.util.MessageManager;
 import jalview.util.Platform;
@@ -147,7 +149,7 @@ public class GDesktop extends JFrame
      */
     try
     {
-      APQHandlers.setAPQHandlers(this);
+      APQHandlers.setAPQHandlers((Desktop) this);
     } catch (Exception e)
     {
       System.out.println("Cannot set APQHandlers");
@@ -212,7 +214,8 @@ public class GDesktop extends JFrame
       @Override
       public void actionPerformed(ActionEvent e)
       {
-        quit();
+        if (Desktop.instance != null)
+          Desktop.instance.desktopQuit();
       }
     });
     aboutMenuItem.setText(MessageManager.getString("label.about"));
@@ -389,10 +392,6 @@ public class GDesktop extends JFrame
       }
     });
 
-    Float specversion = Platform.isJS() ? Float.valueOf(8)
-            : Float.parseFloat(
-                    System.getProperty("java.specification.version"));
-
     desktopMenubar.add(FileMenu);
     desktopMenubar.add(toolsMenu);
     desktopMenubar.add(HelpMenu);
@@ -404,7 +403,10 @@ public class GDesktop extends JFrame
     FileMenu.add(saveAsState);
     FileMenu.add(loadState);
     FileMenu.addSeparator();
-    FileMenu.add(quit);
+    if (!APQHandlers.setQuit)
+    {
+      FileMenu.add(quit);
+    }
     if (!APQHandlers.setAbout)
     {
       HelpMenu.add(aboutMenuItem);