X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGFinder.java;h=1ea4ab5fa455ddfcda38bccdcbf1a900e8568ecd;hb=3d0101179759ef157b088ea135423cd909512d9f;hp=cc202bc7a9499e64a165ed976c260432691bab67;hpb=41f95d0ee770d1a11efb8ece7a50b1e219224631;p=jalview.git

diff --git a/src/jalview/jbgui/GFinder.java b/src/jalview/jbgui/GFinder.java
index cc202bc..1ea4ab5 100755
--- a/src/jalview/jbgui/GFinder.java
+++ b/src/jalview/jbgui/GFinder.java
@@ -1,122 +1,254 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.jbgui;
 
-import javax.swing.*;
-import java.awt.*;
-import java.awt.event.*;
+import jalview.datamodel.AlignmentI;
+import jalview.io.DataSourceType;
+import jalview.io.FileFormat;
+import jalview.io.FormatAdapter;
+import jalview.io.cache.JvCacheableInputBox;
+import jalview.util.MessageManager;
 
+import java.awt.BorderLayout;
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.GridLayout;
+import java.awt.Insets;
+import java.awt.event.ActionEvent;
+import java.awt.event.KeyEvent;
+
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JLabel;
+import javax.swing.JPanel;
+import javax.swing.SwingConstants;
+import javax.swing.SwingUtilities;
+import javax.swing.event.CaretEvent;
+import javax.swing.event.CaretListener;
+import javax.swing.text.JTextComponent;
 
 public class GFinder extends JPanel
 {
-  JLabel jLabel1 = new JLabel();
-  protected JTextField textfield = new JTextField();
+  JLabel jLabelFind = new JLabel();
+
   protected JButton findAll = new JButton();
+
   protected JButton findNext = new JButton();
-  JPanel jPanel1 = new JPanel();
+
+  JPanel actionsPanel = new JPanel();
+
   GridLayout gridLayout1 = new GridLayout();
-  protected JButton createNewGroup = new JButton();
+
+  protected JButton createFeatures = new JButton();
+
+  protected JvCacheableInputBox<String> searchBox = new JvCacheableInputBox<String>(
+          getCacheKey());
+
+  BorderLayout mainBorderLayout = new BorderLayout();
+
+  JPanel jPanel2 = new JPanel();
+
+  JPanel jPanel3 = new JPanel();
+
+  JPanel jPanel4 = new JPanel();
+
+  BorderLayout borderLayout2 = new BorderLayout();
+
+  JPanel jPanel6 = new JPanel();
+
+  protected JCheckBox caseSensitive = new JCheckBox();
+
+  protected JCheckBox searchDescription = new JCheckBox();
+
+  GridLayout optionsGridLayout = new GridLayout();
+
+  private static final String FINDER_CACHE_KEY = "CACHE.FINDER";
 
   public GFinder()
   {
     try
     {
       jbInit();
-    }
-    catch(Exception e)
+    } catch (Exception e)
     {
       e.printStackTrace();
     }
   }
+
   private void jbInit() throws Exception
   {
-    jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
-    jLabel1.setText("Find");
-    jLabel1.setBounds(new Rectangle(3, 30, 34, 15));
-    this.setLayout(null);
-    textfield.setFont(new java.awt.Font("Verdana", 0, 12));
-    textfield.setText("");
-    textfield.setBounds(new Rectangle(40, 27, 133, 21));
-    textfield.addKeyListener(new java.awt.event.KeyAdapter()
-    {
-      public void keyTyped(KeyEvent e)
-      {
-        textfield_keyTyped(e);
-      }
-    });
-    textfield.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        textfield_actionPerformed(e);
-      }
-    });
+    jLabelFind.setFont(new java.awt.Font("Verdana", 0, 12));
+    jLabelFind.setText(MessageManager.getString("label.find"));
+    this.setLayout(mainBorderLayout);
     findAll.setFont(new java.awt.Font("Verdana", 0, 12));
-    findAll.setText("Find all");
+    findAll.setText(MessageManager.getString("action.find_all"));
     findAll.addActionListener(new java.awt.event.ActionListener()
     {
+      @Override
       public void actionPerformed(ActionEvent e)
       {
         findAll_actionPerformed(e);
       }
     });
-    findNext.setEnabled(false);
     findNext.setFont(new java.awt.Font("Verdana", 0, 12));
-    findNext.setText("Find Next");
+    findNext.setText(MessageManager.getString("action.find_next"));
     findNext.addActionListener(new java.awt.event.ActionListener()
     {
+      @Override
       public void actionPerformed(ActionEvent e)
       {
         findNext_actionPerformed(e);
       }
     });
-    jPanel1.setBounds(new Rectangle(180, 5, 141, 64));
-    jPanel1.setLayout(gridLayout1);
+    actionsPanel.setLayout(gridLayout1);
     gridLayout1.setHgap(0);
     gridLayout1.setRows(3);
     gridLayout1.setVgap(2);
-    createNewGroup.setEnabled(false);
-    createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12));
-    createNewGroup.setToolTipText("");
-    createNewGroup.setMargin(new Insets(0, 0, 0, 0));
-    createNewGroup.setText("Create new group");
-    createNewGroup.addActionListener(new java.awt.event.ActionListener()
+    createFeatures.setEnabled(false);
+    createFeatures.setFont(new java.awt.Font("Verdana", 0, 12));
+    createFeatures.setMargin(new Insets(0, 0, 0, 0));
+    createFeatures.setText(MessageManager.getString("label.new_feature"));
+    createFeatures.addActionListener(new java.awt.event.ActionListener()
     {
+      @Override
       public void actionPerformed(ActionEvent e)
       {
-        createNewGroup_actionPerformed(e);
+        createFeatures_actionPerformed();
       }
     });
-    jPanel1.add(findNext, null);
-    jPanel1.add(findAll, null);
-    jPanel1.add(createNewGroup, null);
-    this.add(textfield, null);
-    this.add(jLabel1, null);
-    this.add(jPanel1, null);
+    searchBox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12));
+    ((JTextComponent) searchBox.getEditor().getEditorComponent())
+            .addCaretListener(new CaretListener()
+            {
+              @Override
+              public void caretUpdate(CaretEvent e)
+              {
+                textfield_caretUpdate(e);
+              }
+            });
+    searchBox.getEditor().getEditorComponent()
+            .addKeyListener(new java.awt.event.KeyAdapter()
+            {
+              @Override
+              public void keyPressed(KeyEvent e)
+              {
+                textfield_keyPressed(e);
+              }
+            });
+    mainBorderLayout.setHgap(5);
+    mainBorderLayout.setVgap(5);
+    jPanel4.setLayout(borderLayout2);
+    jPanel2.setPreferredSize(new Dimension(10, 1));
+    jPanel3.setPreferredSize(new Dimension(10, 1));
+    caseSensitive.setHorizontalAlignment(SwingConstants.LEFT);
+    caseSensitive.setText(MessageManager.getString("label.match_case"));
+
+    searchDescription
+            .setText(MessageManager.getString("label.include_description"));
+
+    actionsPanel.add(findNext, null);
+    actionsPanel.add(findAll, null);
+    actionsPanel.add(createFeatures, null);
+    this.add(jLabelFind, java.awt.BorderLayout.WEST);
+    this.add(actionsPanel, java.awt.BorderLayout.EAST);
+    this.add(jPanel2, java.awt.BorderLayout.SOUTH);
+    this.add(jPanel3, java.awt.BorderLayout.NORTH);
+    this.add(jPanel4, java.awt.BorderLayout.CENTER);
+    jPanel4.add(searchBox, java.awt.BorderLayout.NORTH);
+
+    JPanel optionsPanel = new JPanel();
+
+    optionsGridLayout.setHgap(0);
+    optionsGridLayout.setRows(2);
+    optionsGridLayout.setVgap(2);
+    optionsPanel.setLayout(optionsGridLayout);
+    optionsPanel.add(caseSensitive, null);
+    optionsPanel.add(searchDescription, null);
+
+    jPanel4.add(optionsPanel, java.awt.BorderLayout.WEST);
   }
 
-  protected void findNext_actionPerformed(ActionEvent e)
+  protected void textfield_keyPressed(KeyEvent e)
   {
+    if (e.getKeyCode() == KeyEvent.VK_ENTER)
+    {
+      if (!searchBox.isPopupVisible())
+      {
+        e.consume();
+        findNext_actionPerformed(null);
+      }
+    }
+  }
 
+  protected void findNext_actionPerformed(ActionEvent e)
+  {
   }
 
   protected void findAll_actionPerformed(ActionEvent e)
   {
-
   }
 
-
-  protected void textfield_actionPerformed(ActionEvent e)
+  public void createFeatures_actionPerformed()
   {
-
   }
 
-  void textfield_keyTyped(KeyEvent e)
+  public void textfield_caretUpdate(CaretEvent e)
   {
-    findNext.setEnabled(true);
+    if (searchBox.getUserInput().indexOf(">") > -1)
+    {
+      SwingUtilities.invokeLater(new Runnable()
+      {
+        @Override
+        public void run()
+        {
+          String str = searchBox.getUserInput();
+          AlignmentI al = null;
+          try
+          {
+            al = new FormatAdapter().readFile(str, DataSourceType.PASTE,
+                    FileFormat.Fasta);
+          } catch (Exception ex)
+          {
+          }
+          if (al != null && al.getHeight() > 0)
+          {
+            str = jalview.analysis.AlignSeq.extractGaps(
+                    jalview.util.Comparison.GapChars,
+                    al.getSequenceAt(0).getSequenceAsString());
+
+          }
+        }
+      });
+    }
   }
 
-  public void createNewGroup_actionPerformed(ActionEvent e)
+  /**
+   * Returns unique key used for storing Finder cache items in the cache data
+   * structure
+   * 
+   * @return
+   */
+  public String getCacheKey()
   {
-
+    return FINDER_CACHE_KEY;
   }
 
 }