X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGFinder.java;h=45a5957064ec07b88365a7ba479da260ea3e482d;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=76b4b427de5829b8e8d80102d97ba4b387ad62ec;hpb=6cdd4a50a40018b049a8c14efbd71f38270a6a23;p=jalview.git diff --git a/src/jalview/jbgui/GFinder.java b/src/jalview/jbgui/GFinder.java index 76b4b42..45a5957 100755 --- a/src/jalview/jbgui/GFinder.java +++ b/src/jalview/jbgui/GFinder.java @@ -1,117 +1,233 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.jbgui; -import javax.swing.*; -import java.awt.*; -import java.awt.event.*; +import jalview.datamodel.Alignment; +import jalview.io.FormatAdapter; +import jalview.util.MessageManager; +import java.awt.BorderLayout; +import java.awt.Dimension; +import java.awt.Font; +import java.awt.GridLayout; +import java.awt.Insets; +import java.awt.event.ActionEvent; +import java.awt.event.KeyEvent; + +import javax.swing.JButton; +import javax.swing.JCheckBox; +import javax.swing.JLabel; +import javax.swing.JPanel; +import javax.swing.JScrollPane; +import javax.swing.JTextArea; +import javax.swing.SwingConstants; +import javax.swing.SwingUtilities; +import javax.swing.event.CaretEvent; +import javax.swing.event.CaretListener; public class GFinder extends JPanel { - JLabel jLabel1 = new JLabel(); - protected JTextField textfield = new JTextField(); + JLabel jLabelFind = new JLabel(); + protected JButton findAll = new JButton(); + protected JButton findNext = new JButton(); - protected JButton cancel = new JButton(); - JPanel jPanel1 = new JPanel(); + + JPanel actionsPanel = new JPanel(); + GridLayout gridLayout1 = new GridLayout(); + protected JButton createNewGroup = new JButton(); + + JScrollPane jScrollPane1 = new JScrollPane(); + + protected JTextArea textfield = new JTextArea(); + + BorderLayout mainBorderLayout = new BorderLayout(); + + JPanel jPanel2 = new JPanel(); + + JPanel jPanel3 = new JPanel(); + + JPanel jPanel4 = new JPanel(); + + BorderLayout borderLayout2 = new BorderLayout(); + + JPanel jPanel6 = new JPanel(); + + protected JCheckBox caseSensitive = new JCheckBox(); + + protected JCheckBox searchDescription = new JCheckBox(); + + GridLayout optionsGridLayout = new GridLayout(); + public GFinder() { try { jbInit(); - } - catch(Exception e) + } catch (Exception e) { e.printStackTrace(); } } + + private void jbInit() throws Exception { - jLabel1.setFont(new java.awt.Font("Verdana", 0, 12)); - jLabel1.setText("Find"); - jLabel1.setBounds(new Rectangle(6, 28, 34, 15)); - this.setLayout(null); - textfield.setFont(new java.awt.Font("Verdana", 0, 12)); - textfield.setText(""); - textfield.setBounds(new Rectangle(41, 24, 133, 21)); - textfield.addKeyListener(new java.awt.event.KeyAdapter() + jLabelFind.setFont(new java.awt.Font("Verdana", 0, 12)); + jLabelFind.setText(MessageManager.getString("label.find")); + this.setLayout(mainBorderLayout); + findAll.setFont(new java.awt.Font("Verdana", 0, 12)); + findAll.setText(MessageManager.getString("action.find_all")); + findAll.addActionListener(new java.awt.event.ActionListener() { - public void keyTyped(KeyEvent e) + public void actionPerformed(ActionEvent e) { - textfield_keyTyped(e); + findAll_actionPerformed(e); } }); - textfield.addActionListener(new java.awt.event.ActionListener() + findNext.setFont(new java.awt.Font("Verdana", 0, 12)); + findNext.setText(MessageManager.getString("action.find_next")); + findNext.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) { - textfield_actionPerformed(e); + findNext_actionPerformed(e); } }); - findAll.setFont(new java.awt.Font("Verdana", 0, 12)); - findAll.setText("Find all"); - findAll.addActionListener(new java.awt.event.ActionListener() + actionsPanel.setLayout(gridLayout1); + gridLayout1.setHgap(0); + gridLayout1.setRows(3); + gridLayout1.setVgap(2); + createNewGroup.setEnabled(false); + createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12)); + createNewGroup.setMargin(new Insets(0, 0, 0, 0)); + createNewGroup.setText(MessageManager.getString("label.new_feature")); + createNewGroup.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) { - findAll_actionPerformed(e); + createNewGroup_actionPerformed(e); } }); - findNext.setEnabled(false); - findNext.setFont(new java.awt.Font("Verdana", 0, 12)); - findNext.setText("Find Next"); - findNext.addActionListener(new java.awt.event.ActionListener() + textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12)); + textfield.setText(""); + textfield.setLineWrap(true); + textfield.addCaretListener(new CaretListener() { - public void actionPerformed(ActionEvent e) + public void caretUpdate(CaretEvent e) { - findNext_actionPerformed(e); + textfield_caretUpdate(e); } }); - cancel.setFont(new java.awt.Font("Verdana", 0, 12)); - cancel.setText("Close"); - cancel.addActionListener(new java.awt.event.ActionListener() + textfield.addKeyListener(new java.awt.event.KeyAdapter() { - public void actionPerformed(ActionEvent e) + public void keyPressed(KeyEvent e) { - cancel_actionPerformed(e); + textfield_keyPressed(e); } }); - jPanel1.setBounds(new Rectangle(178, 4, 102, 62)); - jPanel1.setLayout(gridLayout1); - gridLayout1.setHgap(0); - gridLayout1.setRows(3); - gridLayout1.setVgap(2); - this.add(textfield, null); - this.add(jPanel1, null); - jPanel1.add(findNext, null); - jPanel1.add(findAll, null); - jPanel1.add(cancel, null); - this.add(jLabel1, null); + + mainBorderLayout.setHgap(5); + mainBorderLayout.setVgap(5); + jPanel4.setLayout(borderLayout2); + jPanel2.setPreferredSize(new Dimension(10, 1)); + jPanel3.setPreferredSize(new Dimension(10, 1)); + caseSensitive.setHorizontalAlignment(SwingConstants.LEFT); + caseSensitive.setText(MessageManager.getString("label.match_case")); + + searchDescription.setText(MessageManager + .getString("label.include_description")); + + actionsPanel.add(findNext, null); + actionsPanel.add(findAll, null); + actionsPanel.add(createNewGroup, null); + this.add(jLabelFind, java.awt.BorderLayout.WEST); + this.add(actionsPanel, java.awt.BorderLayout.EAST); + this.add(jPanel2, java.awt.BorderLayout.SOUTH); + this.add(jPanel3, java.awt.BorderLayout.NORTH); + this.add(jPanel4, java.awt.BorderLayout.CENTER); + jPanel4.add(jScrollPane1, java.awt.BorderLayout.NORTH); + jScrollPane1.getViewport().add(textfield); + + JPanel optionsPanel = new JPanel(); + + optionsGridLayout.setHgap(0); + optionsGridLayout.setRows(2); + optionsGridLayout.setVgap(2); + optionsPanel.setLayout(optionsGridLayout); + optionsPanel.add(caseSensitive, null); + optionsPanel.add(searchDescription, null); + + jPanel4.add(optionsPanel, java.awt.BorderLayout.WEST); } protected void findNext_actionPerformed(ActionEvent e) { - } protected void findAll_actionPerformed(ActionEvent e) { - } - protected void cancel_actionPerformed(ActionEvent e) + protected void textfield_keyPressed(KeyEvent e) { - + if (e.getKeyCode() == KeyEvent.VK_ENTER) + { + e.consume(); + findNext_actionPerformed(null); + } } - protected void textfield_actionPerformed(ActionEvent e) + public void createNewGroup_actionPerformed(ActionEvent e) { - } - void textfield_keyTyped(KeyEvent e) + public void textfield_caretUpdate(CaretEvent e) { - findNext.setEnabled(true); + if (textfield.getText().indexOf(">") > -1) + { + SwingUtilities.invokeLater(new Runnable() + { + public void run() + { + String str = textfield.getText(); + Alignment al = null; + try + { + al = new FormatAdapter().readFile(str, "Paste", "FASTA"); + } catch (Exception ex) + { + } + if (al != null && al.getHeight() > 0) + { + str = jalview.analysis.AlignSeq.extractGaps( + jalview.util.Comparison.GapChars, al.getSequenceAt(0) + .getSequenceAsString()); + + textfield.setText(str); + } + } + }); + } } }