X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGFinder.java;h=af1760f26dd04fe1d3ca9927df2c074259aa7e4a;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=c0b5d0e076a529030ae20f67cd922b59e4220dd5;hpb=2aadcc39283c979394f9f79a862d293d960a0335;p=jalview.git diff --git a/src/jalview/jbgui/GFinder.java b/src/jalview/jbgui/GFinder.java index c0b5d0e..af1760f 100755 --- a/src/jalview/jbgui/GFinder.java +++ b/src/jalview/jbgui/GFinder.java @@ -1,181 +1,232 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ -package jalview.jbgui; - -import java.awt.*; -import java.awt.event.*; -import javax.swing.*; -import javax.swing.event.*; -import jalview.io.FormatAdapter; -import jalview.datamodel.SequenceI; - -public class GFinder - extends JPanel -{ - JLabel jLabel1 = new JLabel(); - protected JButton findAll = new JButton(); - protected JButton findNext = new JButton(); - JPanel jPanel1 = new JPanel(); - GridLayout gridLayout1 = new GridLayout(); - protected JButton createNewGroup = new JButton(); - JScrollPane jScrollPane1 = new JScrollPane(); - protected JTextArea textfield = new JTextArea(); - BorderLayout borderLayout1 = new BorderLayout(); - JPanel jPanel2 = new JPanel(); - JPanel jPanel3 = new JPanel(); - JPanel jPanel4 = new JPanel(); - BorderLayout borderLayout2 = new BorderLayout(); - JPanel jPanel5 = new JPanel(); - JPanel jPanel6 = new JPanel(); - public GFinder() - { - try - { - jbInit(); - } - catch (Exception e) - { - e.printStackTrace(); - } - } - - private void jbInit() - throws Exception - { - jLabel1.setFont(new java.awt.Font("Verdana", 0, 12)); - jLabel1.setText("Find"); - this.setLayout(borderLayout1); - findAll.setFont(new java.awt.Font("Verdana", 0, 12)); - findAll.setText("Find all"); - findAll.addActionListener(new java.awt.event.ActionListener() - { - public void actionPerformed(ActionEvent e) - { - findAll_actionPerformed(e); - } - }); - findNext.setEnabled(false); - findNext.setFont(new java.awt.Font("Verdana", 0, 12)); - findNext.setText("Find Next"); - findNext.addActionListener(new java.awt.event.ActionListener() - { - public void actionPerformed(ActionEvent e) - { - findNext_actionPerformed(e); - } - }); - jPanel1.setLayout(gridLayout1); - gridLayout1.setHgap(0); - gridLayout1.setRows(3); - gridLayout1.setVgap(2); - createNewGroup.setEnabled(false); - createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12)); - createNewGroup.setToolTipText(""); - createNewGroup.setMargin(new Insets(0, 0, 0, 0)); - createNewGroup.setText("New Feature"); - createNewGroup.addActionListener(new java.awt.event.ActionListener() - { - public void actionPerformed(ActionEvent e) - { - createNewGroup_actionPerformed(e); - } - }); - textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12)); - textfield.setText(""); - textfield.setLineWrap(true); - textfield.addCaretListener(new CaretListener() - { - public void caretUpdate(CaretEvent e) - { - textfield_caretUpdate(e); - } - }); - textfield.addKeyListener(new java.awt.event.KeyAdapter() { - public void keyPressed(KeyEvent e) { - textfield_keyPressed(e); - } - }); - - borderLayout1.setHgap(5); - borderLayout1.setVgap(5); - jPanel4.setLayout(borderLayout2); - jPanel2.setPreferredSize(new Dimension(10, 1)); - jPanel3.setPreferredSize(new Dimension(10, 1)); - jPanel1.add(findNext, null); - jPanel1.add(findAll, null); - jPanel1.add(createNewGroup, null); - this.add(jLabel1, java.awt.BorderLayout.WEST); - this.add(jPanel1, java.awt.BorderLayout.EAST); - this.add(jPanel2, java.awt.BorderLayout.SOUTH); - this.add(jPanel3, java.awt.BorderLayout.NORTH); - this.add(jPanel4, java.awt.BorderLayout.CENTER); - jPanel4.add(jScrollPane1, java.awt.BorderLayout.CENTER); - jPanel4.add(jPanel5, java.awt.BorderLayout.SOUTH); - jPanel4.add(jPanel6, java.awt.BorderLayout.NORTH); - jScrollPane1.getViewport().add(textfield); - } - - protected void findNext_actionPerformed(ActionEvent e) - { - } - - protected void findAll_actionPerformed(ActionEvent e) - { - } - - - protected void textfield_keyPressed(KeyEvent e) - { - - if(e.getKeyCode()==KeyEvent.VK_ENTER) - { - e.consume(); - findNext_actionPerformed(null); - } - findNext.setEnabled(true); - } - - public void createNewGroup_actionPerformed(ActionEvent e) - { - } - - public void textfield_caretUpdate(CaretEvent e) - { - if (textfield.getText().indexOf(">") > -1) - { - SwingUtilities.invokeLater(new Runnable() - { - public void run() - { - String str = textfield.getText(); - SequenceI[] sequences = null; - try{sequences = new FormatAdapter().readFile(str, "Paste", "FASTA");} - catch(Exception ex){} - if(sequences!=null && sequences.length>0) - { - str = jalview.analysis.AlignSeq.extractGaps( - jalview.util.Comparison.GapChars, sequences[0].getSequence()); - - textfield.setText(str); - } - } - }); - } - } -} +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9) + * Copyright (C) 2015 The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ +package jalview.jbgui; + +import jalview.datamodel.AlignmentI; +import jalview.io.FormatAdapter; +import jalview.util.MessageManager; + +import java.awt.BorderLayout; +import java.awt.Dimension; +import java.awt.Font; +import java.awt.GridLayout; +import java.awt.Insets; +import java.awt.event.ActionEvent; +import java.awt.event.KeyEvent; + +import javax.swing.JButton; +import javax.swing.JCheckBox; +import javax.swing.JLabel; +import javax.swing.JPanel; +import javax.swing.JScrollPane; +import javax.swing.JTextArea; +import javax.swing.SwingConstants; +import javax.swing.SwingUtilities; +import javax.swing.event.CaretEvent; +import javax.swing.event.CaretListener; + +public class GFinder extends JPanel +{ + JLabel jLabelFind = new JLabel(); + + protected JButton findAll = new JButton(); + + protected JButton findNext = new JButton(); + + JPanel actionsPanel = new JPanel(); + + GridLayout gridLayout1 = new GridLayout(); + + protected JButton createNewGroup = new JButton(); + + JScrollPane jScrollPane1 = new JScrollPane(); + + protected JTextArea textfield = new JTextArea(); + + BorderLayout mainBorderLayout = new BorderLayout(); + + JPanel jPanel2 = new JPanel(); + + JPanel jPanel3 = new JPanel(); + + JPanel jPanel4 = new JPanel(); + + BorderLayout borderLayout2 = new BorderLayout(); + + JPanel jPanel6 = new JPanel(); + + protected JCheckBox caseSensitive = new JCheckBox(); + + protected JCheckBox searchDescription = new JCheckBox(); + + GridLayout optionsGridLayout = new GridLayout(); + + public GFinder() + { + try + { + jbInit(); + } catch (Exception e) + { + e.printStackTrace(); + } + } + + private void jbInit() throws Exception + { + jLabelFind.setFont(new java.awt.Font("Verdana", 0, 12)); + jLabelFind.setText(MessageManager.getString("label.find")); + this.setLayout(mainBorderLayout); + findAll.setFont(new java.awt.Font("Verdana", 0, 12)); + findAll.setText(MessageManager.getString("action.find_all")); + findAll.addActionListener(new java.awt.event.ActionListener() + { + public void actionPerformed(ActionEvent e) + { + findAll_actionPerformed(e); + } + }); + findNext.setFont(new java.awt.Font("Verdana", 0, 12)); + findNext.setText(MessageManager.getString("action.find_next")); + findNext.addActionListener(new java.awt.event.ActionListener() + { + public void actionPerformed(ActionEvent e) + { + findNext_actionPerformed(e); + } + }); + actionsPanel.setLayout(gridLayout1); + gridLayout1.setHgap(0); + gridLayout1.setRows(3); + gridLayout1.setVgap(2); + createNewGroup.setEnabled(false); + createNewGroup.setFont(new java.awt.Font("Verdana", 0, 12)); + createNewGroup.setMargin(new Insets(0, 0, 0, 0)); + createNewGroup.setText(MessageManager.getString("label.new_feature")); + createNewGroup.addActionListener(new java.awt.event.ActionListener() + { + public void actionPerformed(ActionEvent e) + { + createNewGroup_actionPerformed(e); + } + }); + textfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 12)); + textfield.setText(""); + textfield.setLineWrap(true); + textfield.addCaretListener(new CaretListener() + { + public void caretUpdate(CaretEvent e) + { + textfield_caretUpdate(e); + } + }); + textfield.addKeyListener(new java.awt.event.KeyAdapter() + { + public void keyPressed(KeyEvent e) + { + textfield_keyPressed(e); + } + }); + + mainBorderLayout.setHgap(5); + mainBorderLayout.setVgap(5); + jPanel4.setLayout(borderLayout2); + jPanel2.setPreferredSize(new Dimension(10, 1)); + jPanel3.setPreferredSize(new Dimension(10, 1)); + caseSensitive.setHorizontalAlignment(SwingConstants.LEFT); + caseSensitive.setText(MessageManager.getString("label.match_case")); + + searchDescription.setText(MessageManager + .getString("label.include_description")); + + actionsPanel.add(findNext, null); + actionsPanel.add(findAll, null); + actionsPanel.add(createNewGroup, null); + this.add(jLabelFind, java.awt.BorderLayout.WEST); + this.add(actionsPanel, java.awt.BorderLayout.EAST); + this.add(jPanel2, java.awt.BorderLayout.SOUTH); + this.add(jPanel3, java.awt.BorderLayout.NORTH); + this.add(jPanel4, java.awt.BorderLayout.CENTER); + jPanel4.add(jScrollPane1, java.awt.BorderLayout.NORTH); + jScrollPane1.getViewport().add(textfield); + + JPanel optionsPanel = new JPanel(); + + optionsGridLayout.setHgap(0); + optionsGridLayout.setRows(2); + optionsGridLayout.setVgap(2); + optionsPanel.setLayout(optionsGridLayout); + optionsPanel.add(caseSensitive, null); + optionsPanel.add(searchDescription, null); + + jPanel4.add(optionsPanel, java.awt.BorderLayout.WEST); + } + + protected void findNext_actionPerformed(ActionEvent e) + { + } + + protected void findAll_actionPerformed(ActionEvent e) + { + } + + protected void textfield_keyPressed(KeyEvent e) + { + if (e.getKeyCode() == KeyEvent.VK_ENTER) + { + e.consume(); + findNext_actionPerformed(null); + } + } + + public void createNewGroup_actionPerformed(ActionEvent e) + { + } + + public void textfield_caretUpdate(CaretEvent e) + { + if (textfield.getText().indexOf(">") > -1) + { + SwingUtilities.invokeLater(new Runnable() + { + public void run() + { + String str = textfield.getText(); + AlignmentI al = null; + try + { + al = new FormatAdapter().readFile(str, "Paste", "FASTA"); + } catch (Exception ex) + { + } + if (al != null && al.getHeight() > 0) + { + str = jalview.analysis.AlignSeq.extractGaps( + jalview.util.Comparison.GapChars, al.getSequenceAt(0) + .getSequenceAsString()); + + textfield.setText(str); + } + } + }); + } + } +}