X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPCAPanel.java;h=122ad0f77bb32b7ee1496ad39a14a06a3abe9981;hb=3c8a25936a2d805e7e3d7ab82f83b13135406d18;hp=0bc6cac9cfdaa0cb4b064f0ec88a71ff3d947677;hpb=37de9310bec3501cbc6381e0c3dcb282fcaad812;p=jalview.git diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java index 0bc6cac..122ad0f 100755 --- a/src/jalview/jbgui/GPCAPanel.java +++ b/src/jalview/jbgui/GPCAPanel.java @@ -25,6 +25,7 @@ import jalview.util.MessageManager; import java.awt.BorderLayout; import java.awt.Color; import java.awt.FlowLayout; +import java.awt.Font; import java.awt.GridLayout; import java.awt.event.ActionEvent; import java.awt.event.ActionListener; @@ -43,70 +44,29 @@ import javax.swing.event.MenuListener; public class GPCAPanel extends JInternalFrame { - JPanel jPanel2 = new JPanel(); + private static final Font VERDANA_12 = new Font("Verdana", 0, 12); - JLabel jLabel1 = new JLabel(); + protected JComboBox xCombobox = new JComboBox<>(); - JLabel jLabel2 = new JLabel(); + protected JComboBox yCombobox = new JComboBox<>(); - JLabel jLabel3 = new JLabel(); - - protected JComboBox xCombobox = new JComboBox(); - - protected JComboBox yCombobox = new JComboBox(); - - protected JComboBox zCombobox = new JComboBox(); - - protected JButton resetButton = new JButton(); - - FlowLayout flowLayout1 = new FlowLayout(); - - BorderLayout borderLayout1 = new BorderLayout(); - - JMenuBar jMenuBar1 = new JMenuBar(); - - JMenu fileMenu = new JMenu(); - - JMenu saveMenu = new JMenu(); - - protected JMenu scoreMatrixMenu = new JMenu(); - - JMenuItem eps = new JMenuItem(); - - JMenuItem png = new JMenuItem(); - - JMenuItem print = new JMenuItem(); - - JMenuItem outputValues = new JMenuItem(); - - JMenuItem outputPoints = new JMenuItem(); - - JMenuItem outputProjPoints = new JMenuItem(); + protected JComboBox zCombobox = new JComboBox<>(); protected JMenu viewMenu = new JMenu(); protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem(); - JMenuItem bgcolour = new JMenuItem(); - - JMenuItem originalSeqData = new JMenuItem(); - protected JMenu associateViewsMenu = new JMenu(); - protected JMenu calcSettings = new JMenu(); - - protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem(); - - protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem(); - - protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem(); - protected JLabel statusBar = new JLabel(); - protected GridLayout statusPanelLayout = new GridLayout(); - protected JPanel statusPanel = new JPanel(); + protected JMenuItem originalSeqData; + + /** + * Constructor + */ public GPCAPanel() { try @@ -123,135 +83,140 @@ public class GPCAPanel extends JInternalFrame yCombobox.addItem("dim " + i); zCombobox.addItem("dim " + i); } - - setJMenuBar(jMenuBar1); } private void jbInit() throws Exception { - this.getContentPane().setLayout(borderLayout1); - jPanel2.setLayout(flowLayout1); - jLabel1.setFont(new java.awt.Font("Verdana", 0, 12)); + this.getContentPane().setLayout(new BorderLayout()); + JPanel jPanel2 = new JPanel(); + jPanel2.setLayout(new FlowLayout()); + JLabel jLabel1 = new JLabel(); + jLabel1.setFont(VERDANA_12); jLabel1.setText("x="); - jLabel2.setFont(new java.awt.Font("Verdana", 0, 12)); + JLabel jLabel2 = new JLabel(); + jLabel2.setFont(VERDANA_12); jLabel2.setText("y="); - jLabel3.setFont(new java.awt.Font("Verdana", 0, 12)); + JLabel jLabel3 = new JLabel(); + jLabel3.setFont(VERDANA_12); jLabel3.setText("z="); jPanel2.setBackground(Color.white); jPanel2.setBorder(null); - zCombobox.setFont(new java.awt.Font("Verdana", 0, 12)); - zCombobox.addActionListener(new java.awt.event.ActionListener() + zCombobox.setFont(VERDANA_12); + zCombobox.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - zCombobox_actionPerformed(e); + doDimensionChange(); } }); - yCombobox.setFont(new java.awt.Font("Verdana", 0, 12)); - yCombobox.addActionListener(new java.awt.event.ActionListener() + yCombobox.setFont(VERDANA_12); + yCombobox.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - yCombobox_actionPerformed(e); + doDimensionChange(); } }); - xCombobox.setFont(new java.awt.Font("Verdana", 0, 12)); - xCombobox.addActionListener(new java.awt.event.ActionListener() + xCombobox.setFont(VERDANA_12); + xCombobox.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - xCombobox_actionPerformed(e); + doDimensionChange(); } }); - resetButton.setFont(new java.awt.Font("Verdana", 0, 12)); + JButton resetButton = new JButton(); + resetButton.setFont(VERDANA_12); resetButton.setText(MessageManager.getString("action.reset")); - resetButton.addActionListener(new java.awt.event.ActionListener() + resetButton.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent e) { - resetButton_actionPerformed(e); + resetButton_actionPerformed(); } }); + JMenu fileMenu = new JMenu(); fileMenu.setText(MessageManager.getString("action.file")); + JMenu saveMenu = new JMenu(); saveMenu.setText(MessageManager.getString("action.save_as")); - eps.setText("EPS"); + JMenuItem eps = new JMenuItem("EPS"); eps.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - eps_actionPerformed(e); + eps_actionPerformed(); } }); - png.setText("PNG"); + JMenuItem png = new JMenuItem("PNG"); png.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - png_actionPerformed(e); + png_actionPerformed(); } }); + JMenuItem outputValues = new JMenuItem(); outputValues.setText(MessageManager.getString("label.output_values")); outputValues.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - outputValues_actionPerformed(e); + outputValues_actionPerformed(); } }); + JMenuItem outputPoints = new JMenuItem(); outputPoints.setText(MessageManager.getString("label.output_points")); outputPoints.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - outputPoints_actionPerformed(e); + outputPoints_actionPerformed(); } }); - outputProjPoints.setText(MessageManager - .getString("label.output_transformed_points")); + JMenuItem outputProjPoints = new JMenuItem(); + outputProjPoints.setText( + MessageManager.getString("label.output_transformed_points")); outputProjPoints.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - outputProjPoints_actionPerformed(e); + outputProjPoints_actionPerformed(); } }); + JMenuItem print = new JMenuItem(); + print.setText(MessageManager.getString("action.print")); print.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - print_actionPerformed(e); + print_actionPerformed(); } }); viewMenu.setText(MessageManager.getString("action.view")); viewMenu.addMenuListener(new MenuListener() { + @Override public void menuSelected(MenuEvent e) { viewMenu_menuSelected(); } + @Override public void menuDeselected(MenuEvent e) { } - public void menuCanceled(MenuEvent e) - { - } - }); - scoreMatrixMenu.setText(MessageManager - .getString("label.select_score_model")); - scoreMatrixMenu.addMenuListener(new MenuListener() - { - public void menuSelected(MenuEvent e) - { - scoreMatrix_menuSelected(); - } - - public void menuDeselected(MenuEvent e) - { - } - + @Override public void menuCanceled(MenuEvent e) { } @@ -259,68 +224,37 @@ public class GPCAPanel extends JInternalFrame showLabels.setText(MessageManager.getString("label.show_labels")); showLabels.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - showLabels_actionPerformed(e); + showLabels_actionPerformed(); } }); - print.setText(MessageManager.getString("action.print")); + JMenuItem bgcolour = new JMenuItem(); bgcolour.setText(MessageManager.getString("action.background_colour")); bgcolour.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - bgcolour_actionPerformed(e); + bgcolour_actionPerformed(); } }); + originalSeqData = new JMenuItem(); originalSeqData.setText(MessageManager.getString("label.input_data")); originalSeqData.addActionListener(new ActionListener() { - public void actionPerformed(ActionEvent e) - { - originalSeqData_actionPerformed(e); - } - }); - associateViewsMenu.setText(MessageManager - .getString("label.associate_nodes_with")); - calcSettings.setText(MessageManager.getString("action.change_params")); - nuclSetting - .setText(MessageManager.getString("label.nucleotide_matrix")); - protSetting.setText(MessageManager.getString("label.protein_matrix")); - nuclSetting.addActionListener(new ActionListener() - { - @Override - public void actionPerformed(ActionEvent arg0) + public void actionPerformed(ActionEvent e) { - nuclSetting_actionPerfomed(arg0); + originalSeqData_actionPerformed(); } }); - protSetting.addActionListener(new ActionListener() - { + associateViewsMenu.setText( + MessageManager.getString("label.associate_nodes_with")); - @Override - public void actionPerformed(ActionEvent arg0) - { - protSetting_actionPerfomed(arg0); - } - }); - jvVersionSetting.setText(MessageManager - .getString("label.jalview_pca_calculation")); - jvVersionSetting.addActionListener(new ActionListener() - { - @Override - public void actionPerformed(ActionEvent arg0) - { - jvVersionSetting_actionPerfomed(arg0); - } - }); - calcSettings.add(jvVersionSetting); - calcSettings.add(nuclSetting); - calcSettings.add(protSetting); - calcSettings.add(scoreMatrixMenu); - statusPanel.setLayout(statusPanelLayout); - statusBar.setFont(new java.awt.Font("Verdana", 0, 12)); + statusPanel.setLayout(new GridLayout()); + statusBar.setFont(VERDANA_12); // statusPanel.setBackground(Color.lightGray); // statusBar.setBackground(Color.lightGray); // statusPanel.add(statusBar, null); @@ -335,9 +269,11 @@ public class GPCAPanel extends JInternalFrame jPanel2.add(jLabel3, null); jPanel2.add(zCombobox, null); jPanel2.add(resetButton, null); + + JMenuBar jMenuBar1 = new JMenuBar(); jMenuBar1.add(fileMenu); jMenuBar1.add(viewMenu); - jMenuBar1.add(calcSettings); + setJMenuBar(jMenuBar1); fileMenu.add(saveMenu); fileMenu.add(outputValues); fileMenu.add(print); @@ -351,97 +287,51 @@ public class GPCAPanel extends JInternalFrame viewMenu.add(associateViewsMenu); } - protected void scoreMatrix_menuSelected() + protected void resetButton_actionPerformed() { - // TODO Auto-generated method stub - } - protected void resetButton_actionPerformed(ActionEvent e) + protected void outputPoints_actionPerformed() { - // TODO Auto-generated method stub - } - protected void protSetting_actionPerfomed(ActionEvent arg0) + protected void outputProjPoints_actionPerformed() { - // TODO Auto-generated method stub - } - protected void nuclSetting_actionPerfomed(ActionEvent arg0) + protected void eps_actionPerformed() { - // TODO Auto-generated method stub - } - protected void outputPoints_actionPerformed(ActionEvent e) + protected void png_actionPerformed() { - // TODO Auto-generated method stub - } - protected void outputProjPoints_actionPerformed(ActionEvent e) + protected void outputValues_actionPerformed() { - // TODO Auto-generated method stub - } - protected void xCombobox_actionPerformed(ActionEvent e) + protected void print_actionPerformed() { } - protected void yCombobox_actionPerformed(ActionEvent e) + protected void showLabels_actionPerformed() { } - protected void zCombobox_actionPerformed(ActionEvent e) + protected void bgcolour_actionPerformed() { } - public void eps_actionPerformed(ActionEvent e) + protected void originalSeqData_actionPerformed() { - } - public void png_actionPerformed(ActionEvent e) + protected void viewMenu_menuSelected() { - - } - - public void outputValues_actionPerformed(ActionEvent e) - { - - } - - public void print_actionPerformed(ActionEvent e) - { - - } - - public void showLabels_actionPerformed(ActionEvent e) - { - } - public void bgcolour_actionPerformed(ActionEvent e) + protected void doDimensionChange() { - - } - - public void originalSeqData_actionPerformed(ActionEvent e) - { - - } - - public void viewMenu_menuSelected() - { - - } - - protected void jvVersionSetting_actionPerfomed(ActionEvent arg0) - { - // TODO Auto-generated method stub - } }