X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPCAPanel.java;h=15d4b3e2e9a7d7f57feca11510f55de9af778d78;hb=bce28a70c870ff1283a8dd2720a7da69203039f0;hp=62234bfb049b587304ef781006235b111ea7b0dd;hpb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;p=jalview.git

diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java
index 62234bf..15d4b3e 100755
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -38,7 +38,9 @@ public class GPCAPanel extends JInternalFrame
   protected JComboBox yCombobox = new JComboBox();
 
   protected JComboBox zCombobox = new JComboBox();
-
+  
+  protected JButton resetButton = new JButton();
+  
   FlowLayout flowLayout1 = new FlowLayout();
 
   BorderLayout borderLayout1 = new BorderLayout();
@@ -71,6 +73,14 @@ public class GPCAPanel extends JInternalFrame
 
   protected JMenu associateViewsMenu = new JMenu();
 
+  protected JMenu calcSettings=new JMenu();
+  protected JCheckBoxMenuItem nuclSetting=new JCheckBoxMenuItem();
+  protected JCheckBoxMenuItem protSetting=new JCheckBoxMenuItem();
+  protected JCheckBoxMenuItem jvVersionSetting=new JCheckBoxMenuItem();
+  
+  protected JLabel statusBar = new JLabel();
+  protected GridLayout statusPanelLayout = new GridLayout();
+  protected JPanel statusPanel=new JPanel();
   public GPCAPanel()
   {
     try
@@ -127,6 +137,16 @@ public class GPCAPanel extends JInternalFrame
         xCombobox_actionPerformed(e);
       }
     });
+    resetButton.setFont(new java.awt.Font("Verdana",0,12));
+    resetButton.setText("Reset");
+    resetButton.addActionListener(new java.awt.event.ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        resetButton_actionPerformed(e);
+      }
+    });
     fileMenu.setText("File");
     saveMenu.setText("Save as");
     eps.setText("EPS");
@@ -218,15 +238,58 @@ public class GPCAPanel extends JInternalFrame
       }
     });
     associateViewsMenu.setText("Associate Nodes With");
-    this.getContentPane().add(jPanel2, BorderLayout.SOUTH);
+    calcSettings.setText("Change Parameters");
+    nuclSetting.setText("Nucleotide matrix");
+    protSetting.setText("Protein matrix");
+    nuclSetting.addActionListener(new ActionListener()
+    {
+      
+      @Override
+      public void actionPerformed(ActionEvent arg0)
+      {
+        nuclSetting_actionPerfomed(arg0);
+      }
+    });
+    protSetting.addActionListener(new ActionListener()
+    {
+      
+      @Override
+      public void actionPerformed(ActionEvent arg0)
+      {
+        protSetting_actionPerfomed(arg0);
+      }
+    });
+    jvVersionSetting.setText("Jalview PCA Calculation");
+    jvVersionSetting.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent arg0)
+      {
+        jvVersionSetting_actionPerfomed(arg0);
+      }
+    });
+    calcSettings.add(jvVersionSetting);
+    calcSettings.add(nuclSetting);
+    calcSettings.add(protSetting);
+    statusPanel.setLayout(statusPanelLayout);
+    statusBar.setFont(new java.awt.Font("Verdana",0,12));
+    //statusPanel.setBackground(Color.lightGray);
+    //statusBar.setBackground(Color.lightGray);
+    //statusPanel.add(statusBar, null);
+    JPanel panelBar = new JPanel(new BorderLayout());
+    panelBar.add(jPanel2, BorderLayout.NORTH);
+    panelBar.add(statusPanel, BorderLayout.SOUTH);
+    this.getContentPane().add(panelBar, BorderLayout.SOUTH);
     jPanel2.add(jLabel1, null);
     jPanel2.add(xCombobox, null);
     jPanel2.add(jLabel2, null);
     jPanel2.add(yCombobox, null);
     jPanel2.add(jLabel3, null);
     jPanel2.add(zCombobox, null);
+    jPanel2.add(resetButton, null);
     jMenuBar1.add(fileMenu);
     jMenuBar1.add(viewMenu);
+    jMenuBar1.add(calcSettings);
     fileMenu.add(saveMenu);
     fileMenu.add(outputValues);
     fileMenu.add(print);
@@ -240,6 +303,24 @@ public class GPCAPanel extends JInternalFrame
     viewMenu.add(associateViewsMenu);
   }
 
+  protected void resetButton_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+    
+  }
+
+  protected void protSetting_actionPerfomed(ActionEvent arg0)
+  {
+    // TODO Auto-generated method stub
+    
+  }
+
+  protected void nuclSetting_actionPerfomed(ActionEvent arg0)
+  {
+    // TODO Auto-generated method stub
+    
+  }
+
   protected void outputPoints_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub
@@ -303,4 +384,10 @@ public class GPCAPanel extends JInternalFrame
   {
 
   }
+
+  protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
+  {
+    // TODO Auto-generated method stub
+    
+  }
 }