X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPCAPanel.java;h=4a9770ff43fdcf11ebd9aff7f4e1878d57d02f9e;hb=b7791df75a2e535cfe438e85b101918eedeb71dc;hp=67eb3c1f7c8817b24308164bef6119f1e77a1e1b;hpb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;p=jalview.git diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java index 67eb3c1..4a9770f 100755 --- a/src/jalview/jbgui/GPCAPanel.java +++ b/src/jalview/jbgui/GPCAPanel.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,11 +20,13 @@ */ package jalview.jbgui; +import jalview.util.ImageMaker.TYPE; import jalview.util.MessageManager; import java.awt.BorderLayout; import java.awt.Color; import java.awt.FlowLayout; +import java.awt.Font; import java.awt.GridLayout; import java.awt.event.ActionEvent; import java.awt.event.ActionListener; @@ -43,54 +45,20 @@ import javax.swing.event.MenuListener; public class GPCAPanel extends JInternalFrame { - JPanel jPanel2 = new JPanel(); + private static final Font VERDANA_12 = new Font("Verdana", 0, 12); - JLabel jLabel1 = new JLabel(); + protected JComboBox xCombobox = new JComboBox(); - JLabel jLabel2 = new JLabel(); + protected JComboBox yCombobox = new JComboBox(); - JLabel jLabel3 = new JLabel(); + protected JComboBox zCombobox = new JComboBox(); - protected JComboBox xCombobox = new JComboBox(); - - protected JComboBox yCombobox = new JComboBox(); - - protected JComboBox zCombobox = new JComboBox(); - - protected JButton resetButton = new JButton(); - - FlowLayout flowLayout1 = new FlowLayout(); - - BorderLayout borderLayout1 = new BorderLayout(); - - JMenuBar jMenuBar1 = new JMenuBar(); - - JMenu fileMenu = new JMenu(); - - JMenu saveMenu = new JMenu(); - - protected JMenu scoreMatrixMenu = new JMenu(); - - JMenuItem eps = new JMenuItem(); - - JMenuItem png = new JMenuItem(); - - JMenuItem print = new JMenuItem(); - - JMenuItem outputValues = new JMenuItem(); - - JMenuItem outputPoints = new JMenuItem(); - - JMenuItem outputProjPoints = new JMenuItem(); + protected JMenu scoreModelMenu = new JMenu(); protected JMenu viewMenu = new JMenu(); protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem(); - JMenuItem bgcolour = new JMenuItem(); - - JMenuItem originalSeqData = new JMenuItem(); - protected JMenu associateViewsMenu = new JMenu(); protected JMenu calcSettings = new JMenu(); @@ -99,12 +67,8 @@ public class GPCAPanel extends JInternalFrame protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem(); - protected JLabel statusBar = new JLabel(); - protected GridLayout statusPanelLayout = new GridLayout(); - protected JPanel statusPanel = new JPanel(); public GPCAPanel() @@ -123,49 +87,55 @@ public class GPCAPanel extends JInternalFrame yCombobox.addItem("dim " + i); zCombobox.addItem("dim " + i); } - - setJMenuBar(jMenuBar1); } private void jbInit() throws Exception { - this.getContentPane().setLayout(borderLayout1); - jPanel2.setLayout(flowLayout1); - jLabel1.setFont(new java.awt.Font("Verdana", 0, 12)); + this.getContentPane().setLayout(new BorderLayout()); + JPanel jPanel2 = new JPanel(); + jPanel2.setLayout(new FlowLayout()); + JLabel jLabel1 = new JLabel(); + jLabel1.setFont(VERDANA_12); jLabel1.setText("x="); - jLabel2.setFont(new java.awt.Font("Verdana", 0, 12)); + JLabel jLabel2 = new JLabel(); + jLabel2.setFont(VERDANA_12); jLabel2.setText("y="); - jLabel3.setFont(new java.awt.Font("Verdana", 0, 12)); + JLabel jLabel3 = new JLabel(); + jLabel3.setFont(VERDANA_12); jLabel3.setText("z="); jPanel2.setBackground(Color.white); jPanel2.setBorder(null); - zCombobox.setFont(new java.awt.Font("Verdana", 0, 12)); - zCombobox.addActionListener(new java.awt.event.ActionListener() + zCombobox.setFont(VERDANA_12); + zCombobox.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { zCombobox_actionPerformed(e); } }); - yCombobox.setFont(new java.awt.Font("Verdana", 0, 12)); - yCombobox.addActionListener(new java.awt.event.ActionListener() + yCombobox.setFont(VERDANA_12); + yCombobox.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { yCombobox_actionPerformed(e); } }); - xCombobox.setFont(new java.awt.Font("Verdana", 0, 12)); - xCombobox.addActionListener(new java.awt.event.ActionListener() + xCombobox.setFont(VERDANA_12); + xCombobox.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { xCombobox_actionPerformed(e); } }); - resetButton.setFont(new java.awt.Font("Verdana", 0, 12)); + JButton resetButton = new JButton(); + resetButton.setFont(VERDANA_12); resetButton.setText(MessageManager.getString("action.reset")); - resetButton.addActionListener(new java.awt.event.ActionListener() + resetButton.addActionListener(new ActionListener() { @Override public void actionPerformed(ActionEvent e) @@ -173,51 +143,64 @@ public class GPCAPanel extends JInternalFrame resetButton_actionPerformed(e); } }); + JMenu fileMenu = new JMenu(); fileMenu.setText(MessageManager.getString("action.file")); + JMenu saveMenu = new JMenu(); saveMenu.setText(MessageManager.getString("action.save_as")); - eps.setText("EPS"); + JMenuItem eps = new JMenuItem("EPS"); eps.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - eps_actionPerformed(e); + makePCAImage(TYPE.EPS); } }); - png.setText("PNG"); + JMenuItem png = new JMenuItem("PNG"); png.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - png_actionPerformed(e); + makePCAImage(TYPE.PNG); } }); + JMenuItem outputValues = new JMenuItem(); outputValues.setText(MessageManager.getString("label.output_values")); outputValues.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { outputValues_actionPerformed(e); } }); + JMenuItem outputPoints = new JMenuItem(); outputPoints.setText(MessageManager.getString("label.output_points")); outputPoints.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { outputPoints_actionPerformed(e); } }); - outputProjPoints.setText(MessageManager - .getString("label.output_transformed_points")); + JMenuItem outputProjPoints = new JMenuItem(); + outputProjPoints.setText( + MessageManager.getString("label.output_transformed_points")); outputProjPoints.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { outputProjPoints_actionPerformed(e); } }); + JMenuItem print = new JMenuItem(); + print.setText(MessageManager.getString("action.print")); print.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { print_actionPerformed(e); @@ -226,32 +209,38 @@ public class GPCAPanel extends JInternalFrame viewMenu.setText(MessageManager.getString("action.view")); viewMenu.addMenuListener(new MenuListener() { + @Override public void menuSelected(MenuEvent e) { viewMenu_menuSelected(); } + @Override public void menuDeselected(MenuEvent e) { } + @Override public void menuCanceled(MenuEvent e) { } }); - scoreMatrixMenu.setText(MessageManager - .getString("label.select_score_model")); - scoreMatrixMenu.addMenuListener(new MenuListener() + scoreModelMenu + .setText(MessageManager.getString("label.select_score_model")); + scoreModelMenu.addMenuListener(new MenuListener() { + @Override public void menuSelected(MenuEvent e) { - scoreMatrix_menuSelected(); + scoreModel_menuSelected(); } + @Override public void menuDeselected(MenuEvent e) { } + @Override public void menuCanceled(MenuEvent e) { } @@ -259,30 +248,34 @@ public class GPCAPanel extends JInternalFrame showLabels.setText(MessageManager.getString("label.show_labels")); showLabels.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { showLabels_actionPerformed(e); } }); - print.setText(MessageManager.getString("action.print")); + JMenuItem bgcolour = new JMenuItem(); bgcolour.setText(MessageManager.getString("action.background_colour")); bgcolour.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { bgcolour_actionPerformed(e); } }); + JMenuItem originalSeqData = new JMenuItem(); originalSeqData.setText(MessageManager.getString("label.input_data")); originalSeqData.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent e) { originalSeqData_actionPerformed(e); } }); - associateViewsMenu.setText(MessageManager - .getString("label.associate_nodes_with")); + associateViewsMenu.setText( + MessageManager.getString("label.associate_nodes_with")); calcSettings.setText(MessageManager.getString("action.change_params")); nuclSetting .setText(MessageManager.getString("label.nucleotide_matrix")); @@ -305,22 +298,12 @@ public class GPCAPanel extends JInternalFrame protSetting_actionPerfomed(arg0); } }); - jvVersionSetting.setText(MessageManager - .getString("label.jalview_pca_calculation")); - jvVersionSetting.addActionListener(new ActionListener() - { - @Override - public void actionPerformed(ActionEvent arg0) - { - jvVersionSetting_actionPerfomed(arg0); - } - }); - calcSettings.add(jvVersionSetting); + calcSettings.add(nuclSetting); calcSettings.add(protSetting); - calcSettings.add(scoreMatrixMenu); - statusPanel.setLayout(statusPanelLayout); - statusBar.setFont(new java.awt.Font("Verdana", 0, 12)); + calcSettings.add(scoreModelMenu); + statusPanel.setLayout(new GridLayout()); + statusBar.setFont(VERDANA_12); // statusPanel.setBackground(Color.lightGray); // statusBar.setBackground(Color.lightGray); // statusPanel.add(statusBar, null); @@ -335,9 +318,12 @@ public class GPCAPanel extends JInternalFrame jPanel2.add(jLabel3, null); jPanel2.add(zCombobox, null); jPanel2.add(resetButton, null); + + JMenuBar jMenuBar1 = new JMenuBar(); jMenuBar1.add(fileMenu); jMenuBar1.add(viewMenu); jMenuBar1.add(calcSettings); + setJMenuBar(jMenuBar1); fileMenu.add(saveMenu); fileMenu.add(outputValues); fileMenu.add(print); @@ -351,7 +337,7 @@ public class GPCAPanel extends JInternalFrame viewMenu.add(associateViewsMenu); } - protected void scoreMatrix_menuSelected() + protected void scoreModel_menuSelected() { // TODO Auto-generated method stub @@ -399,14 +385,8 @@ public class GPCAPanel extends JInternalFrame { } - public void eps_actionPerformed(ActionEvent e) + public void makePCAImage(TYPE imageType) { - - } - - public void png_actionPerformed(ActionEvent e) - { - } public void outputValues_actionPerformed(ActionEvent e) @@ -438,10 +418,4 @@ public class GPCAPanel extends JInternalFrame { } - - protected void jvVersionSetting_actionPerfomed(ActionEvent arg0) - { - // TODO Auto-generated method stub - - } }