X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPCAPanel.java;h=843a4ecc3ccc687d2d343a74213caa539f9d6cbe;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=26a9fd969b70b0222ff64d8e74af187f1a564446;hpb=852dabb94136a9986a8fab1efa1ba434e1554920;p=jalview.git

diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java
index 26a9fd9..843a4ec 100755
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -1,232 +1,306 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
- *
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
- *
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
- * GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
- */
-package jalview.jbgui;
-
-import java.awt.*;
-import java.awt.event.*;
-import javax.swing.*;
-
-public class GPCAPanel
-    extends JInternalFrame
-{
-  JPanel jPanel2 = new JPanel();
-  JLabel jLabel1 = new JLabel();
-  JLabel jLabel2 = new JLabel();
-  JLabel jLabel3 = new JLabel();
-  protected JComboBox xCombobox = new JComboBox();
-  protected JComboBox yCombobox = new JComboBox();
-  protected JComboBox zCombobox = new JComboBox();
-  FlowLayout flowLayout1 = new FlowLayout();
-  BorderLayout borderLayout1 = new BorderLayout();
-  JMenuBar jMenuBar1 = new JMenuBar();
-  JMenu fileMenu = new JMenu();
-  JMenu saveMenu = new JMenu();
-  JMenuItem eps = new JMenuItem();
-  JMenuItem png = new JMenuItem();
-  JMenuItem print = new JMenuItem();
-  JMenuItem outputValues = new JMenuItem();
-  JMenu viewMenu = new JMenu();
-  protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
-  JMenuItem bgcolour = new JMenuItem();
-  JMenuItem originalSeqData = new JMenuItem();
-
-  public GPCAPanel()
-  {
-    try
-    {
-      jbInit();
-    }
-    catch (Exception e)
-    {
-      e.printStackTrace();
-    }
-
-    for (int i = 1; i < 8; i++)
-    {
-      xCombobox.addItem("dim " + i);
-      yCombobox.addItem("dim " + i);
-      zCombobox.addItem("dim " + i);
-    }
-
-
-    setJMenuBar(jMenuBar1);
-  }
-
-  private void jbInit()
-      throws Exception
-  {
-    this.getContentPane().setLayout(borderLayout1);
-    jPanel2.setLayout(flowLayout1);
-    jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
-    jLabel1.setText("x=");
-    jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
-    jLabel2.setText("y=");
-    jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
-    jLabel3.setText("z=");
-    jPanel2.setBackground(Color.white);
-    jPanel2.setBorder(null);
-    zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
-    zCombobox.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        zCombobox_actionPerformed(e);
-      }
-    });
-    yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
-    yCombobox.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        yCombobox_actionPerformed(e);
-      }
-    });
-    xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
-    xCombobox.addActionListener(new java.awt.event.ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        xCombobox_actionPerformed(e);
-      }
-    });
-    fileMenu.setText("File");
-    saveMenu.setText("Save as");
-    eps.setText("EPS");
-    eps.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        eps_actionPerformed(e);
-      }
-    });
-    png.setText("PNG");
-    png.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        png_actionPerformed(e);
-      }
-    });
-    outputValues.setText("Output Values...");
-    outputValues.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        outputValues_actionPerformed(e);
-      }
-    });
-    print.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        print_actionPerformed(e);
-      }
-    });
-    viewMenu.setText("View");
-    showLabels.setText("Show Labels");
-    showLabels.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        showLabels_actionPerformed(e);
-      }
-    });
-    print.setText("Print");
-    bgcolour.setText("Background Colour...");
-    bgcolour.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        bgcolour_actionPerformed(e);
-      }
-    });
-    originalSeqData.setText("PCA was made from this...");
-    originalSeqData.addActionListener(new ActionListener()
-    {
-      public void actionPerformed(ActionEvent e)
-      {
-        originalSeqData_actionPerformed(e);
-      }
-    });
-    this.getContentPane().add(jPanel2, BorderLayout.SOUTH);
-    jPanel2.add(jLabel1, null);
-    jPanel2.add(xCombobox, null);
-    jPanel2.add(jLabel2, null);
-    jPanel2.add(yCombobox, null);
-    jPanel2.add(jLabel3, null);
-    jPanel2.add(zCombobox, null);
-    jMenuBar1.add(fileMenu);
-    jMenuBar1.add(viewMenu);
-    fileMenu.add(saveMenu);
-    fileMenu.add(outputValues);
-    fileMenu.add(print);
-    fileMenu.add(originalSeqData);
-    saveMenu.add(eps);
-    saveMenu.add(png);
-    viewMenu.add(showLabels);
-    viewMenu.add(bgcolour);
-  }
-
-  protected void xCombobox_actionPerformed(ActionEvent e)
-  {
-  }
-
-  protected void yCombobox_actionPerformed(ActionEvent e)
-  {
-  }
-
-  protected void zCombobox_actionPerformed(ActionEvent e)
-  {
-  }
-
-  public void eps_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  public void png_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  public void outputValues_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  public void print_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  public void showLabels_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  public void bgcolour_actionPerformed(ActionEvent e)
-  {
-
-  }
-
-  public void originalSeqData_actionPerformed(ActionEvent e)
-  {
-
-  }
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ */
+package jalview.jbgui;
+
+import java.awt.*;
+import java.awt.event.*;
+
+import javax.swing.*;
+import javax.swing.event.*;
+
+public class GPCAPanel extends JInternalFrame
+{
+  JPanel jPanel2 = new JPanel();
+
+  JLabel jLabel1 = new JLabel();
+
+  JLabel jLabel2 = new JLabel();
+
+  JLabel jLabel3 = new JLabel();
+
+  protected JComboBox xCombobox = new JComboBox();
+
+  protected JComboBox yCombobox = new JComboBox();
+
+  protected JComboBox zCombobox = new JComboBox();
+
+  FlowLayout flowLayout1 = new FlowLayout();
+
+  BorderLayout borderLayout1 = new BorderLayout();
+
+  JMenuBar jMenuBar1 = new JMenuBar();
+
+  JMenu fileMenu = new JMenu();
+
+  JMenu saveMenu = new JMenu();
+
+  JMenuItem eps = new JMenuItem();
+
+  JMenuItem png = new JMenuItem();
+
+  JMenuItem print = new JMenuItem();
+
+  JMenuItem outputValues = new JMenuItem();
+
+  JMenuItem outputPoints = new JMenuItem();
+
+  JMenuItem outputProjPoints = new JMenuItem();
+
+  protected JMenu viewMenu = new JMenu();
+
+  protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
+
+  JMenuItem bgcolour = new JMenuItem();
+
+  JMenuItem originalSeqData = new JMenuItem();
+
+  protected JMenu associateViewsMenu = new JMenu();
+
+  public GPCAPanel()
+  {
+    try
+    {
+      jbInit();
+    } catch (Exception e)
+    {
+      e.printStackTrace();
+    }
+
+    for (int i = 1; i < 8; i++)
+    {
+      xCombobox.addItem("dim " + i);
+      yCombobox.addItem("dim " + i);
+      zCombobox.addItem("dim " + i);
+    }
+
+    setJMenuBar(jMenuBar1);
+  }
+
+  private void jbInit() throws Exception
+  {
+    this.getContentPane().setLayout(borderLayout1);
+    jPanel2.setLayout(flowLayout1);
+    jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
+    jLabel1.setText("x=");
+    jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
+    jLabel2.setText("y=");
+    jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
+    jLabel3.setText("z=");
+    jPanel2.setBackground(Color.white);
+    jPanel2.setBorder(null);
+    zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
+    zCombobox.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        zCombobox_actionPerformed(e);
+      }
+    });
+    yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
+    yCombobox.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        yCombobox_actionPerformed(e);
+      }
+    });
+    xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
+    xCombobox.addActionListener(new java.awt.event.ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        xCombobox_actionPerformed(e);
+      }
+    });
+    fileMenu.setText("File");
+    saveMenu.setText("Save as");
+    eps.setText("EPS");
+    eps.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        eps_actionPerformed(e);
+      }
+    });
+    png.setText("PNG");
+    png.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        png_actionPerformed(e);
+      }
+    });
+    outputValues.setText("Output Values...");
+    outputValues.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        outputValues_actionPerformed(e);
+      }
+    });
+    outputPoints.setText("Output points...");
+    outputPoints.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        outputPoints_actionPerformed(e);
+      }
+    });
+    outputProjPoints.setText("Output transformed points...");
+    outputProjPoints.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        outputProjPoints_actionPerformed(e);
+      }
+    });
+    print.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        print_actionPerformed(e);
+      }
+    });
+    viewMenu.setText("View");
+    viewMenu.addMenuListener(new MenuListener()
+    {
+      public void menuSelected(MenuEvent e)
+      {
+        viewMenu_menuSelected();
+      }
+
+      public void menuDeselected(MenuEvent e)
+      {
+      }
+
+      public void menuCanceled(MenuEvent e)
+      {
+      }
+    });
+    showLabels.setText("Show Labels");
+    showLabels.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        showLabels_actionPerformed(e);
+      }
+    });
+    print.setText("Print");
+    bgcolour.setText("Background Colour...");
+    bgcolour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        bgcolour_actionPerformed(e);
+      }
+    });
+    originalSeqData.setText("Input Data...");
+    originalSeqData.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        originalSeqData_actionPerformed(e);
+      }
+    });
+    associateViewsMenu.setText("Associate Nodes With");
+    this.getContentPane().add(jPanel2, BorderLayout.SOUTH);
+    jPanel2.add(jLabel1, null);
+    jPanel2.add(xCombobox, null);
+    jPanel2.add(jLabel2, null);
+    jPanel2.add(yCombobox, null);
+    jPanel2.add(jLabel3, null);
+    jPanel2.add(zCombobox, null);
+    jMenuBar1.add(fileMenu);
+    jMenuBar1.add(viewMenu);
+    fileMenu.add(saveMenu);
+    fileMenu.add(outputValues);
+    fileMenu.add(print);
+    fileMenu.add(originalSeqData);
+    fileMenu.add(outputPoints);
+    fileMenu.add(outputProjPoints);
+    saveMenu.add(eps);
+    saveMenu.add(png);
+    viewMenu.add(showLabels);
+    viewMenu.add(bgcolour);
+    viewMenu.add(associateViewsMenu);
+  }
+
+  protected void outputPoints_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void outputProjPoints_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void xCombobox_actionPerformed(ActionEvent e)
+  {
+  }
+
+  protected void yCombobox_actionPerformed(ActionEvent e)
+  {
+  }
+
+  protected void zCombobox_actionPerformed(ActionEvent e)
+  {
+  }
+
+  public void eps_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void png_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void outputValues_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void print_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void showLabels_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void bgcolour_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void originalSeqData_actionPerformed(ActionEvent e)
+  {
+
+  }
+
+  public void viewMenu_menuSelected()
+  {
+
+  }
+}