X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPCAPanel.java;h=edfbf99036604f37c139c71f308678d75dd0f826;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=d7e1ba48883eafc9865b9cb52002c8568b7a608b;hpb=fbd03b3f123f3462c5fe685c988e5c4ae601558c;p=jalview.git

diff --git a/src/jalview/jbgui/GPCAPanel.java b/src/jalview/jbgui/GPCAPanel.java
index d7e1ba4..edfbf99 100755
--- a/src/jalview/jbgui/GPCAPanel.java
+++ b/src/jalview/jbgui/GPCAPanel.java
@@ -1,19 +1,20 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
  * 
  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
 package jalview.jbgui;
 
@@ -39,6 +40,8 @@ public class GPCAPanel extends JInternalFrame
 
   protected JComboBox zCombobox = new JComboBox();
 
+  protected JButton resetButton = new JButton();
+
   FlowLayout flowLayout1 = new FlowLayout();
 
   BorderLayout borderLayout1 = new BorderLayout();
@@ -56,8 +59,9 @@ public class GPCAPanel extends JInternalFrame
   JMenuItem print = new JMenuItem();
 
   JMenuItem outputValues = new JMenuItem();
-  
+
   JMenuItem outputPoints = new JMenuItem();
+
   JMenuItem outputProjPoints = new JMenuItem();
 
   protected JMenu viewMenu = new JMenu();
@@ -70,6 +74,20 @@ public class GPCAPanel extends JInternalFrame
 
   protected JMenu associateViewsMenu = new JMenu();
 
+  protected JMenu calcSettings = new JMenu();
+
+  protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
+
+  protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
+
+  protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
+
+  protected JLabel statusBar = new JLabel();
+
+  protected GridLayout statusPanelLayout = new GridLayout();
+
+  protected JPanel statusPanel = new JPanel();
+
   public GPCAPanel()
   {
     try
@@ -126,6 +144,16 @@ public class GPCAPanel extends JInternalFrame
         xCombobox_actionPerformed(e);
       }
     });
+    resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
+    resetButton.setText("Reset");
+    resetButton.addActionListener(new java.awt.event.ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent e)
+      {
+        resetButton_actionPerformed(e);
+      }
+    });
     fileMenu.setText("File");
     saveMenu.setText("Save as");
     eps.setText("EPS");
@@ -217,15 +245,58 @@ public class GPCAPanel extends JInternalFrame
       }
     });
     associateViewsMenu.setText("Associate Nodes With");
-    this.getContentPane().add(jPanel2, BorderLayout.SOUTH);
+    calcSettings.setText("Change Parameters");
+    nuclSetting.setText("Nucleotide matrix");
+    protSetting.setText("Protein matrix");
+    nuclSetting.addActionListener(new ActionListener()
+    {
+
+      @Override
+      public void actionPerformed(ActionEvent arg0)
+      {
+        nuclSetting_actionPerfomed(arg0);
+      }
+    });
+    protSetting.addActionListener(new ActionListener()
+    {
+
+      @Override
+      public void actionPerformed(ActionEvent arg0)
+      {
+        protSetting_actionPerfomed(arg0);
+      }
+    });
+    jvVersionSetting.setText("Jalview PCA Calculation");
+    jvVersionSetting.addActionListener(new ActionListener()
+    {
+      @Override
+      public void actionPerformed(ActionEvent arg0)
+      {
+        jvVersionSetting_actionPerfomed(arg0);
+      }
+    });
+    calcSettings.add(jvVersionSetting);
+    calcSettings.add(nuclSetting);
+    calcSettings.add(protSetting);
+    statusPanel.setLayout(statusPanelLayout);
+    statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
+    // statusPanel.setBackground(Color.lightGray);
+    // statusBar.setBackground(Color.lightGray);
+    // statusPanel.add(statusBar, null);
+    JPanel panelBar = new JPanel(new BorderLayout());
+    panelBar.add(jPanel2, BorderLayout.NORTH);
+    panelBar.add(statusPanel, BorderLayout.SOUTH);
+    this.getContentPane().add(panelBar, BorderLayout.SOUTH);
     jPanel2.add(jLabel1, null);
     jPanel2.add(xCombobox, null);
     jPanel2.add(jLabel2, null);
     jPanel2.add(yCombobox, null);
     jPanel2.add(jLabel3, null);
     jPanel2.add(zCombobox, null);
+    jPanel2.add(resetButton, null);
     jMenuBar1.add(fileMenu);
     jMenuBar1.add(viewMenu);
+    jMenuBar1.add(calcSettings);
     fileMenu.add(saveMenu);
     fileMenu.add(outputValues);
     fileMenu.add(print);
@@ -239,16 +310,34 @@ public class GPCAPanel extends JInternalFrame
     viewMenu.add(associateViewsMenu);
   }
 
+  protected void resetButton_actionPerformed(ActionEvent e)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void protSetting_actionPerfomed(ActionEvent arg0)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
+  protected void nuclSetting_actionPerfomed(ActionEvent arg0)
+  {
+    // TODO Auto-generated method stub
+
+  }
+
   protected void outputPoints_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   protected void outputProjPoints_actionPerformed(ActionEvent e)
   {
     // TODO Auto-generated method stub
-    
+
   }
 
   protected void xCombobox_actionPerformed(ActionEvent e)
@@ -302,4 +391,10 @@ public class GPCAPanel extends JInternalFrame
   {
 
   }
+
+  protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
+  {
+    // TODO Auto-generated method stub
+
+  }
 }