X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPreferences.java;h=1d35477244f18cb0384a47855c7b6855d9958efa;hb=cf491d18e6affbfacfc67eda7c6bceedd457982f;hp=13120e05eec112471238e356d6d1ab5db2082f45;hpb=5dc62d509b6d0f90f3545bf40b272390410eda45;p=jalview.git

diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index 13120e0..1d35477 100755
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
- * Copyright (C) 2014 The Jalview Authors
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
  * 
  * This file is part of Jalview.
  * 
@@ -158,7 +158,9 @@ public class GPreferences extends JPanel
 
   protected JPanel maxColour = new JPanel();
 
-  protected JComboBox<String> colour = new JComboBox<String>();
+  protected JComboBox<String> protColour = new JComboBox<String>();
+
+  protected JComboBox<String> nucColour = new JComboBox<String>();
 
   /*
    * Connections tab components
@@ -694,16 +696,30 @@ public class GPreferences extends JPanel
         maxColour_actionPerformed(maxColour);
       }
     });
-    colour.setFont(verdana11);
-    colour.setBounds(new Rectangle(172, 225, 155, 21));
-    JLabel colourLabel = new JLabel();
-    colourLabel.setFont(verdana11);
-    colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);
-    colourLabel.setText(MessageManager.getString("label.alignment_colour")
+
+    protColour.setFont(verdana11);
+    protColour.setBounds(new Rectangle(172, 225, 155, 21));
+    JLabel protColourLabel = new JLabel();
+    protColourLabel.setFont(verdana11);
+    protColourLabel.setHorizontalAlignment(SwingConstants.LEFT);
+    protColourLabel.setText(MessageManager
+            .getString("label.prot_alignment_colour") + " ");
+    JvSwingUtils.addtoLayout(coloursTab, MessageManager
+            .getString("label.default_colour_scheme_for_alignment"),
+            protColourLabel, protColour);
+
+    nucColour.setFont(verdana11);
+    nucColour.setBounds(new Rectangle(172, 240, 155, 21));
+    JLabel nucColourLabel = new JLabel();
+    nucColourLabel.setFont(verdana11);
+    nucColourLabel.setHorizontalAlignment(SwingConstants.LEFT);
+    nucColourLabel.setText(MessageManager
+            .getString("label.nuc_alignment_colour")
             + " ");
     JvSwingUtils.addtoLayout(coloursTab, MessageManager
             .getString("label.default_colour_scheme_for_alignment"),
-            colourLabel, colour);
+            nucColourLabel, nucColour);
+
     JPanel annotationShding = new JPanel();
     annotationShding.setBorder(new TitledBorder(MessageManager
             .getString("label.annotation_shading_default")));