X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPreferences.java;h=2001efd9fa775de198c783878568b511f4ba8781;hb=e21fb8306a9efaf170d7354daa10e7ee42d37c17;hp=7cca77cd6e369e987c2697a9376f028f8d7c85cc;hpb=32ce9ddb7ce1a68add53dd81785ae428ca136a83;p=jalview.git

diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index 7cca77c..2001efd 100755
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -42,8 +42,7 @@ public class GPreferences extends JPanel
     BorderLayout borderLayout1 = new BorderLayout();
     protected JCheckBox quality = new JCheckBox();
     JPanel visualTab = new JPanel();
-    protected JCheckBox dbRef = new JCheckBox();
-    protected JCheckBox fullScreen = new JCheckBox();
+  protected JCheckBox fullScreen = new JCheckBox();
     protected JCheckBox conservation = new JCheckBox();
     protected JCheckBox identity = new JCheckBox();
     protected JCheckBox annotations = new JCheckBox();
@@ -98,7 +97,6 @@ public class GPreferences extends JPanel
   protected  JCheckBox msfjv = new JCheckBox();
   protected  JCheckBox fastajv = new JCheckBox();
   protected  JCheckBox pfamjv = new JCheckBox();
-  JLabel jLabel11 = new JLabel();
   FlowLayout flowLayout1 = new FlowLayout();
   protected  JCheckBox pirjv = new JCheckBox();
   JPanel jPanel11 = new JPanel();
@@ -152,11 +150,6 @@ public class GPreferences extends JPanel
         quality.setText("Quality");
     visualTab.setBorder(new TitledBorder("Open new alignment"));
     visualTab.setLayout(null);
-    dbRef.setFont(verdana11);
-    dbRef.setHorizontalAlignment(SwingConstants.RIGHT);
-    dbRef.setHorizontalTextPosition(SwingConstants.LEFT);
-    dbRef.setMargin(new Insets(4, 2, 2, 0));
-    dbRef.setText("DB prefix (DB|AccNo)");
     fullScreen.setFont(verdana11);
         fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);
         fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);
@@ -327,13 +320,10 @@ public class GPreferences extends JPanel
     epsRendering.setBounds(new Rectangle(154, 34, 187, 21));
     jLabel1.setFont(verdana11);
     jLabel1.setHorizontalAlignment(SwingConstants.CENTER);
-    jLabel1.setText("/start-end suffix");
+    jLabel1.setText("Append /start-end (/15-380)");
     jLabel1.setFont(verdana11);
     fastajv.setFont(verdana11);
     fastajv.setHorizontalAlignment(SwingConstants.LEFT);
-    jLabel11.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
-    jLabel11.setHorizontalAlignment(SwingConstants.CENTER);
-    jLabel11.setText("(/15-380)");
     clustaljv.setText("Clustal     ");
     blcjv.setText("BLC     ");
     fastajv.setText("Fasta     ");
@@ -345,7 +335,7 @@ public class GPreferences extends JPanel
     pirjv.setText("PIR     ");
     jPanel11.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
     jPanel11.setBorder(titledBorder2);
-    jPanel11.setBounds(new Rectangle(63, 70, 137, 182));
+    jPanel11.setBounds(new Rectangle(30, 72, 196, 182));
     jPanel11.setLayout(gridLayout3);
     blcjv.setFont(verdana11);
     blcjv.setHorizontalAlignment(SwingConstants.LEFT);
@@ -358,13 +348,13 @@ public class GPreferences extends JPanel
     pirjv.setFont(verdana11);
     pirjv.setHorizontalAlignment(SwingConstants.LEFT);
     seqLimit.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+    seqLimit.setHorizontalAlignment(SwingConstants.RIGHT);
     seqLimit.setHorizontalTextPosition(SwingConstants.LEADING);
-    seqLimit.setText("Sequence Limits (/1-350)");
-    seqLimit.setBounds(new Rectangle(172, 82, 195, 23));
-    gridLayout3.setRows(9);
+    seqLimit.setText("Full Sequence Id");
+    gridLayout3.setRows(8);
     jPanel2.add(fullScreen);
     jPanel2.add(annotations);
-    jPanel2.add(dbRef);
+    jPanel2.add(seqLimit);
     jPanel2.add(fontLabel);
     jPanel2.add(gapLabel);
     jPanel2.add(colourLabel);
@@ -372,7 +362,6 @@ public class GPreferences extends JPanel
     jPanel2.add(startupCheckbox);
     visualTab.add(gapSymbolCB);
     visualTab.add(colour);
-    visualTab.add(seqLimit);
     visualTab.add(jPanel3);
     jPanel3.add(conservation);
     jPanel3.add(identity);
@@ -436,7 +425,6 @@ public class GPreferences extends JPanel
     tabbedPane.add(connectTab,"Connections");
     tabbedPane.add(exportTab, "Output");
     jPanel11.add(jLabel1);
-    jPanel11.add(jLabel11);
     jPanel11.add(blcjv);
     jPanel11.add(clustaljv);
     jPanel11.add(fastajv);