X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPreferences.java;h=2b194bf36078d4155f5b2a8e6992328acf6284c2;hb=5dd663636925f44c6f964fa32fed2f584223b295;hp=bc4a37b09350bd129105af366dfd47da8bcd355d;hpb=b0a90dcb797054f5e01a3b10969e782ef3aafa4a;p=jalview.git

diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index bc4a37b..2b194bf 100755
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -114,6 +114,7 @@ public class GPreferences extends JPanel
   BorderLayout borderLayout4 = new BorderLayout();
   protected JCheckBox wrap = new JCheckBox();
   protected JCheckBox rightAlign = new JCheckBox();
+  protected JCheckBox idItalics = new JCheckBox();
   /**
      * Creates a new GPreferences object.
      */
@@ -193,7 +194,7 @@ public class GPreferences extends JPanel
         gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);
         gapLabel.setText("Gap Symbol ");
     colour.setFont(verdana11);
-        colour.setBounds(new Rectangle(172, 203, 155, 21));
+        colour.setBounds(new Rectangle(172, 225, 155, 21));
         colourLabel.setFont(verdana11);
         colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);
         colourLabel.setText("Colour ");
@@ -207,14 +208,14 @@ public class GPreferences extends JPanel
         fontNameCB.setFont(verdana11);
         fontNameCB.setBounds(new Rectangle(172, 111, 147, 21));
         gapSymbolCB.setFont(verdana11);
-        gapSymbolCB.setBounds(new Rectangle(172, 179, 69, 21));
+        gapSymbolCB.setBounds(new Rectangle(172, 204, 69, 21));
         startupCheckbox.setText("Open file");
     startupCheckbox.setFont(verdana11);
         startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);
         startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);
         startupCheckbox.setSelected(true);
         startupFileTextfield.setFont(verdana11);
-        startupFileTextfield.setBounds(new Rectangle(172, 249, 270, 20));
+        startupFileTextfield.setBounds(new Rectangle(172, 273, 270, 20));
         startupFileTextfield.addMouseListener(new MouseAdapter()
             {
                 public void mouseClicked(MouseEvent e)
@@ -312,14 +313,14 @@ public class GPreferences extends JPanel
     jPanel1.setBorder(titledBorder1);
     jPanel1.setLayout(gridBagLayout1);
     sortby.setFont(verdana11);
-    sortby.setBounds(new Rectangle(172, 225, 155, 21));
+    sortby.setBounds(new Rectangle(172, 249, 155, 21));
     sortLabel.setFont(verdana11);
     sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);
     sortLabel.setText("Sort by ");
-    jPanel2.setBounds(new Rectangle(7, 17, 158, 257));
+    jPanel2.setBounds(new Rectangle(7, 17, 158, 278));
     jPanel2.setLayout(gridLayout2);
-    gridLayout2.setRows(11);
-    jPanel3.setBounds(new Rectangle(169, 39, 274, 26));
+    gridLayout2.setRows(12);
+    jPanel3.setBounds(new Rectangle(173, 35, 274, 26));
     exportTab.setLayout(null);
     epsLabel.setFont(verdana11);
     epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);
@@ -385,26 +386,30 @@ public class GPreferences extends JPanel
     rightAlign.setHorizontalAlignment(SwingConstants.RIGHT);
     rightAlign.setHorizontalTextPosition(SwingConstants.LEFT);
     rightAlign.setText("Right Align Ids");
+    idItalics.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+    idItalics.setHorizontalAlignment(SwingConstants.RIGHT);
+    idItalics.setHorizontalTextPosition(SwingConstants.LEADING);
+    idItalics.setText("Sequence Name Italics");
     jPanel2.add(fullScreen);
-
     jPanel2.add(annotations);
     jPanel2.add(seqLimit);
     jPanel2.add(rightAlign);
     jPanel2.add(fontLabel);
+    jPanel2.add(idItalics);
     jPanel2.add(smoothFont);
     jPanel2.add(wrap);
     jPanel2.add(gapLabel);
     jPanel2.add(colourLabel);
     jPanel2.add(sortLabel);
     jPanel2.add(startupCheckbox);
-    visualTab.add(fontNameCB);
-    visualTab.add(fontSizeCB);
-    visualTab.add(fontStyleCB);
     visualTab.add(startupFileTextfield);
-    visualTab.add(gapSymbolCB);
-    visualTab.add(colour);
     visualTab.add(sortby);
+    visualTab.add(colour);
+    visualTab.add(gapSymbolCB);
     visualTab.add(jPanel3);
+    visualTab.add(fontNameCB);
+    visualTab.add(fontSizeCB);
+    visualTab.add(fontStyleCB);
     jPanel3.add(conservation);
     jPanel3.add(identity);
     jPanel3.add(quality);
@@ -543,4 +548,5 @@ public class GPreferences extends JPanel
       proxyServerTB.setEnabled(useProxy.isSelected());
       proxyPortTB.setEnabled(useProxy.isSelected());
   }
+
 }