X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPreferences.java;h=327cdc519e1cb6b51f3194b8cffb7c86bc384993;hb=65a4ec4dee935394e57a2af5a9daa2f6ecc4aef3;hp=1ad95ddcfedbdc15dd902572fbf0eea85344144b;hpb=136c0793b90b72b928c4d77dc109dd5c644e00d3;p=jalview.git diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java index 1ad95dd..327cdc5 100755 --- a/src/jalview/jbgui/GPreferences.java +++ b/src/jalview/jbgui/GPreferences.java @@ -81,8 +81,8 @@ public class GPreferences extends JPanel { private static final Font LABEL_FONT = JvSwingUtils.getLabelFont(); - private static final Font LABEL_FONT_ITALIC = JvSwingUtils.getLabelFont( - false, true); + private static final Font LABEL_FONT_ITALIC = JvSwingUtils + .getLabelFont(false, true); /* * Visual tab components @@ -95,11 +95,11 @@ public class GPreferences extends JPanel protected JCheckBox rightAlign = new JCheckBox(); - protected JComboBox fontSizeCB = new JComboBox(); + protected JComboBox fontSizeCB = new JComboBox<>(); - protected JComboBox fontStyleCB = new JComboBox(); + protected JComboBox fontStyleCB = new JComboBox<>(); - protected JComboBox fontNameCB = new JComboBox(); + protected JComboBox fontNameCB = new JComboBox<>(); protected JCheckBox showOccupancy = new JCheckBox(); @@ -111,15 +111,15 @@ public class GPreferences extends JPanel protected JCheckBox scaleProteinToCdna = new JCheckBox(); - protected JComboBox gapSymbolCB = new JComboBox(); + protected JComboBox gapSymbolCB = new JComboBox<>(); protected JCheckBox wrap = new JCheckBox(); - protected JComboBox sortby = new JComboBox(); + protected JComboBox sortby = new JComboBox<>(); - protected JComboBox sortAnnBy = new JComboBox(); + protected JComboBox sortAnnBy = new JComboBox<>(); - protected JComboBox sortAutocalc = new JComboBox(); + protected JComboBox sortAutocalc = new JComboBox<>(); protected JCheckBox startupCheckbox = new JCheckBox(); @@ -159,7 +159,7 @@ public class GPreferences extends JPanel protected JCheckBox addTempFactor = new JCheckBox(); - protected JComboBox structViewer = new JComboBox(); + protected JComboBox structViewer = new JComboBox<>(); protected JTextField chimeraPath = new JTextField(); @@ -176,9 +176,22 @@ public class GPreferences extends JPanel protected JPanel maxColour = new JPanel(); - protected JComboBox protColour = new JComboBox(); + protected JComboBox protColour = new JComboBox<>(); - protected JComboBox nucColour = new JComboBox(); + protected JComboBox nucColour = new JComboBox<>(); + + /* + * Overview tab components + */ + protected JPanel gapColour = new JPanel(); + + protected JPanel hiddenColour = new JPanel(); + + protected JCheckBox useLegacyGap; + + protected JCheckBox showHiddenAtStart; + + protected JLabel gapLabel; /* * Connections tab components @@ -216,7 +229,7 @@ public class GPreferences extends JPanel /* * Output tab components */ - protected JComboBox epsRendering = new JComboBox(); + protected JComboBox epsRendering = new JComboBox<>(); protected JLabel userIdWidthlabel = new JLabel(); @@ -251,10 +264,6 @@ public class GPreferences extends JPanel protected JCheckBox sortByTree = new JCheckBox(); - /* - * DAS Settings tab - */ - protected JPanel dasTab = new JPanel(); /* * Web Services tab @@ -282,7 +291,7 @@ public class GPreferences extends JPanel */ private void jbInit() throws Exception { - final JTabbedPane tabbedPane = new JTabbedPane(); + final JTabbedPane tabbedPane = jalview.jbgui.swing.JTabbedPane.createTabbedPane(); this.setLayout(new BorderLayout()); JPanel okCancelPanel = initOkCancelPanel(); this.add(tabbedPane, BorderLayout.CENTER); @@ -294,6 +303,9 @@ public class GPreferences extends JPanel tabbedPane.add(initColoursTab(), MessageManager.getString("label.colours")); + tabbedPane.add(initOverviewTab(), + MessageManager.getString("label.overview")); + tabbedPane.add(initStructureTab(), MessageManager.getString("label.structure")); @@ -310,12 +322,6 @@ public class GPreferences extends JPanel MessageManager.getString("label.editing")); /* - * See DasSourceBrowser for the real work of configuring this tab. - */ - dasTab.setLayout(new BorderLayout()); - tabbedPane.add(dasTab, MessageManager.getString("label.das_settings")); - - /* * See WsPreferences for the real work of configuring this tab. */ wsTab.setLayout(new BorderLayout()); @@ -357,18 +363,18 @@ public class GPreferences extends JPanel JPanel editingTab = new JPanel(); editingTab.setLayout(null); autoCalculateConsCheck.setFont(LABEL_FONT); - autoCalculateConsCheck.setText(MessageManager - .getString("label.autocalculate_consensus")); + autoCalculateConsCheck.setText( + MessageManager.getString("label.autocalculate_consensus")); autoCalculateConsCheck.setBounds(new Rectangle(21, 52, 209, 23)); padGaps.setFont(LABEL_FONT); - padGaps.setText(MessageManager.getString("label.pad_gaps_when_editing")); + padGaps.setText( + MessageManager.getString("label.pad_gaps_when_editing")); padGaps.setBounds(new Rectangle(22, 94, 168, 23)); sortByTree.setFont(LABEL_FONT); sortByTree .setText(MessageManager.getString("label.sort_with_new_tree")); - sortByTree - .setToolTipText(MessageManager - .getString("label.any_trees_calculated_or_loaded_alignment_automatically_sort")); + sortByTree.setToolTipText(MessageManager.getString( + "label.any_trees_calculated_or_loaded_alignment_automatically_sort")); sortByTree.setBounds(new Rectangle(22, 136, 168, 23)); editingTab.add(autoCalculateConsCheck); editingTab.add(padGaps); @@ -428,11 +434,10 @@ public class GPreferences extends JPanel pirjv.setFont(LABEL_FONT); pirjv.setHorizontalAlignment(SwingConstants.LEFT); autoIdWidth.setFont(LABEL_FONT); - autoIdWidth.setText(MessageManager - .getString("label.automatically_set_id_width")); - autoIdWidth.setToolTipText(JvSwingUtils.wrapTooltip(true, - MessageManager - .getString("label.adjusts_width_generated_eps_png"))); + autoIdWidth.setText( + MessageManager.getString("label.automatically_set_id_width")); + autoIdWidth.setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager + .getString("label.adjusts_width_generated_eps_png"))); autoIdWidth.setBounds(new Rectangle(228, 96, 188, 23)); autoIdWidth.addActionListener(new ActionListener() { @@ -444,14 +449,13 @@ public class GPreferences extends JPanel } }); userIdWidthlabel.setFont(LABEL_FONT); - userIdWidthlabel.setText(MessageManager - .getString("label.figure_id_column_width")); - userIdWidth - .setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager - .getString("label.manually_specify_width_left_column"))); - userIdWidthlabel - .setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager - .getString("label.manually_specify_width_left_column"))); + userIdWidthlabel.setText( + MessageManager.getString("label.figure_id_column_width")); + userIdWidth.setToolTipText(JvSwingUtils.wrapTooltip(true, MessageManager + .getString("label.manually_specify_width_left_column"))); + userIdWidthlabel.setToolTipText( + JvSwingUtils.wrapTooltip(true, MessageManager.getString( + "label.manually_specify_width_left_column"))); userIdWidthlabel.setBounds(new Rectangle(236, 120, 168, 23)); userIdWidth.setFont(JvSwingUtils.getTextAreaFont()); userIdWidth.setText(""); @@ -466,8 +470,8 @@ public class GPreferences extends JPanel } }); modellerOutput.setFont(LABEL_FONT); - modellerOutput.setText(MessageManager - .getString("label.use_modeller_output")); + modellerOutput + .setText(MessageManager.getString("label.use_modeller_output")); modellerOutput.setBounds(new Rectangle(228, 226, 168, 23)); embbedBioJSON.setFont(LABEL_FONT); embbedBioJSON.setText(MessageManager.getString("label.embbed_biojson")); @@ -506,11 +510,13 @@ public class GPreferences extends JPanel JLabel browserLabel = new JLabel(); browserLabel.setFont(LABEL_FONT); browserLabel.setHorizontalAlignment(SwingConstants.TRAILING); - browserLabel.setText(MessageManager - .getString("label.default_browser_unix")); + browserLabel.setText( + MessageManager.getString("label.default_browser_unix")); defaultBrowser.setFont(LABEL_FONT); defaultBrowser.setText(""); - + final String tooltip = JvSwingUtils.wrapTooltip(true, + MessageManager.getString("label.double_click_to_browse")); + defaultBrowser.setToolTipText(tooltip); defaultBrowser.addMouseListener(new MouseAdapter() { @Override @@ -527,9 +533,10 @@ public class GPreferences extends JPanel initConnTabCheckboxes(); // Add default Browser text box - connectTab.add(browserLabel, new GridBagConstraints(0, 0, 1, 1, 0.0, - 0.0, GridBagConstraints.WEST, GridBagConstraints.NONE, - new Insets(10, 0, 5, 5), 5, 1)); + connectTab.add(browserLabel, + new GridBagConstraints(0, 0, 1, 1, 0.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.NONE, + new Insets(10, 0, 5, 5), 5, 1)); defaultBrowser.setFont(LABEL_FONT); defaultBrowser.setText(""); @@ -543,21 +550,25 @@ public class GPreferences extends JPanel new Insets(10, 0, 5, 12), 4, 10)); // Add usage stats, version check and questionnaire checkboxes - connectTab.add(usagestats, new GridBagConstraints(0, 2, 1, 1, 1.0, 0.0, - GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, - new Insets(0, 2, 5, 5), 70, 1)); - connectTab.add(questionnaire, new GridBagConstraints(1, 2, 1, 1, 1.0, - 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, - new Insets(0, 2, 5, 10), 70, 1)); - connectTab.add(versioncheck, new GridBagConstraints(0, 3, 1, 1, 1.0, - 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, - new Insets(0, 2, 5, 5), 70, 1)); + connectTab.add(usagestats, + new GridBagConstraints(0, 2, 1, 1, 1.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, + new Insets(0, 2, 5, 5), 70, 1)); + connectTab.add(questionnaire, + new GridBagConstraints(1, 2, 1, 1, 1.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, + new Insets(0, 2, 5, 10), 70, 1)); + connectTab.add(versioncheck, + new GridBagConstraints(0, 3, 1, 1, 1.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, + new Insets(0, 2, 5, 5), 70, 1)); // Add padding so the panel doesn't look ridiculous JPanel spacePanel = new JPanel(); - connectTab.add(spacePanel, new GridBagConstraints(0, 4, 1, 1, 1.0, 1.0, - GridBagConstraints.WEST, GridBagConstraints.BOTH, new Insets(0, - 0, 0, 5), 70, 1)); + connectTab.add(spacePanel, + new GridBagConstraints(0, 4, 1, 1, 1.0, 1.0, + GridBagConstraints.WEST, GridBagConstraints.BOTH, + new Insets(0, 0, 0, 5), 70, 1)); return connectTab; } @@ -590,8 +601,8 @@ public class GPreferences extends JPanel // Panel for links functionality JPanel linkPanel = new JPanel(new GridBagLayout()); - linkPanel.setBorder(new TitledBorder(MessageManager - .getString("label.url_linkfrom_sequence_id"))); + linkPanel.setBorder(new TitledBorder( + MessageManager.getString("label.url_linkfrom_sequence_id"))); // Put the Url links panel together @@ -690,7 +701,7 @@ public class GPreferences extends JPanel // no current selection, so initially disable delete/edit buttons editLink.setEnabled(false); deleteLink.setEnabled(false); - + newLink.addActionListener(new java.awt.event.ActionListener() { @Override @@ -793,21 +804,26 @@ public class GPreferences extends JPanel MessageManager.getString("label.proxy_server")); proxyPanel.setBorder(titledBorder1); proxyPanel.setLayout(new GridBagLayout()); - proxyPanel.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, - 0.0, GridBagConstraints.WEST, GridBagConstraints.NONE, - new Insets(0, 2, 2, 0), 5, 0)); - proxyPanel.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0, - GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0, - 0, 2, 0), 11, 0)); - proxyPanel.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0, - GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0, - 2, 5, 185), 2, -4)); - proxyPanel.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, - 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, - new Insets(0, 2, 2, 2), 54, 1)); - proxyPanel.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, - 0.0, GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, - new Insets(0, 2, 2, 0), 263, 1)); + proxyPanel.add(serverLabel, + new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.NONE, + new Insets(0, 2, 2, 0), 5, 0)); + proxyPanel.add(portLabel, + new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.NONE, + new Insets(0, 0, 2, 0), 11, 0)); + proxyPanel.add(useProxy, + new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.NONE, + new Insets(0, 2, 5, 185), 2, -4)); + proxyPanel.add(proxyPortTB, + new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, + new Insets(0, 2, 2, 2), 54, 1)); + proxyPanel.add(proxyServerTB, + new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0, + GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, + new Insets(0, 2, 2, 0), 263, 1)); return proxyPanel; } @@ -818,22 +834,22 @@ public class GPreferences extends JPanel private void initConnTabCheckboxes() { // Usage stats checkbox label - usagestats.setText(MessageManager - .getString("label.send_usage_statistics")); + usagestats.setText( + MessageManager.getString("label.send_usage_statistics")); usagestats.setFont(LABEL_FONT); usagestats.setHorizontalAlignment(SwingConstants.RIGHT); usagestats.setHorizontalTextPosition(SwingConstants.LEADING); // Questionnaire checkbox label - questionnaire.setText(MessageManager - .getString("label.check_for_questionnaires")); + questionnaire.setText( + MessageManager.getString("label.check_for_questionnaires")); questionnaire.setFont(LABEL_FONT); questionnaire.setHorizontalAlignment(SwingConstants.RIGHT); questionnaire.setHorizontalTextPosition(SwingConstants.LEADING); // Check for latest version checkbox label - versioncheck.setText(MessageManager - .getString("label.check_for_latest_version")); + versioncheck.setText( + MessageManager.getString("label.check_for_latest_version")); versioncheck.setFont(LABEL_FONT); versioncheck.setHorizontalAlignment(SwingConstants.RIGHT); versioncheck.setHorizontalTextPosition(SwingConstants.LEADING); @@ -880,8 +896,8 @@ public class GPreferences extends JPanel private JPanel initColoursTab() { JPanel coloursTab = new JPanel(); - coloursTab.setBorder(new TitledBorder(MessageManager - .getString("action.open_new_alignment"))); + coloursTab.setBorder(new TitledBorder( + MessageManager.getString("action.open_new_alignment"))); coloursTab.setLayout(new FlowLayout()); JLabel mincolourLabel = new JLabel(); mincolourLabel.setFont(LABEL_FONT); @@ -919,10 +935,11 @@ public class GPreferences extends JPanel JLabel protColourLabel = new JLabel(); protColourLabel.setFont(LABEL_FONT); protColourLabel.setHorizontalAlignment(SwingConstants.LEFT); - protColourLabel.setText(MessageManager - .getString("label.prot_alignment_colour") + " "); - JvSwingUtils.addtoLayout(coloursTab, MessageManager - .getString("label.default_colour_scheme_for_alignment"), + protColourLabel.setText( + MessageManager.getString("label.prot_alignment_colour") + " "); + JvSwingUtils.addtoLayout(coloursTab, + MessageManager + .getString("label.default_colour_scheme_for_alignment"), protColourLabel, protColour); nucColour.setFont(LABEL_FONT); @@ -930,27 +947,175 @@ public class GPreferences extends JPanel JLabel nucColourLabel = new JLabel(); nucColourLabel.setFont(LABEL_FONT); nucColourLabel.setHorizontalAlignment(SwingConstants.LEFT); - nucColourLabel.setText(MessageManager - .getString("label.nuc_alignment_colour") + " "); - JvSwingUtils.addtoLayout(coloursTab, MessageManager - .getString("label.default_colour_scheme_for_alignment"), + nucColourLabel.setText( + MessageManager.getString("label.nuc_alignment_colour") + " "); + JvSwingUtils.addtoLayout(coloursTab, + MessageManager + .getString("label.default_colour_scheme_for_alignment"), nucColourLabel, nucColour); JPanel annotationShding = new JPanel(); - annotationShding.setBorder(new TitledBorder(MessageManager - .getString("label.annotation_shading_default"))); + annotationShding.setBorder(new TitledBorder( + MessageManager.getString("label.annotation_shading_default"))); annotationShding.setLayout(new GridLayout(1, 2)); - JvSwingUtils.addtoLayout(annotationShding, MessageManager - .getString("label.default_minimum_colour_annotation_shading"), + JvSwingUtils.addtoLayout(annotationShding, + MessageManager.getString( + "label.default_minimum_colour_annotation_shading"), mincolourLabel, minColour); - JvSwingUtils.addtoLayout(annotationShding, MessageManager - .getString("label.default_maximum_colour_annotation_shading"), + JvSwingUtils.addtoLayout(annotationShding, + MessageManager.getString( + "label.default_maximum_colour_annotation_shading"), maxcolourLabel, maxColour); coloursTab.add(annotationShding); // , FlowLayout.LEFT); return coloursTab; } /** + * Initialises the Overview tabbed panel. + * + * @return + */ + private JPanel initOverviewTab() + { + JPanel overviewPanel = new JPanel(); + overviewPanel.setBorder(new TitledBorder( + MessageManager.getString("label.overview_settings"))); + + gapColour.setFont(LABEL_FONT); + // fixing the border colours stops apparent colour bleed from the panel + gapColour.setBorder( + BorderFactory.createEtchedBorder(Color.white, Color.lightGray)); + gapColour.setPreferredSize(new Dimension(40, 20)); + gapColour.addMouseListener(new MouseAdapter() + { + @Override + public void mousePressed(MouseEvent e) + { + gapColour_actionPerformed(gapColour); + } + }); + + hiddenColour.setFont(LABEL_FONT); + // fixing the border colours stops apparent colour bleed from the panel + hiddenColour.setBorder( + BorderFactory.createEtchedBorder(Color.white, Color.lightGray)); + hiddenColour.setPreferredSize(new Dimension(40, 20)); + hiddenColour.addMouseListener(new MouseAdapter() + { + @Override + public void mousePressed(MouseEvent e) + { + hiddenColour_actionPerformed(hiddenColour); + } + }); + + useLegacyGap = new JCheckBox( + MessageManager.getString("label.ov_legacy_gap")); + useLegacyGap.setFont(LABEL_FONT); + useLegacyGap.setHorizontalAlignment(SwingConstants.LEFT); + useLegacyGap.setVerticalTextPosition(SwingConstants.TOP); + gapLabel = new JLabel( + MessageManager.getString("label.gap_colour")); + gapLabel.setFont(LABEL_FONT); + gapLabel.setHorizontalAlignment(SwingConstants.LEFT); + gapLabel.setVerticalTextPosition(SwingConstants.TOP); + showHiddenAtStart = new JCheckBox( + MessageManager.getString("label.ov_show_hide_default")); + showHiddenAtStart.setFont(LABEL_FONT); + showHiddenAtStart.setHorizontalAlignment(SwingConstants.LEFT); + showHiddenAtStart.setVerticalTextPosition(SwingConstants.TOP); + JLabel hiddenLabel = new JLabel( + MessageManager.getString("label.hidden_colour")); + hiddenLabel.setFont(LABEL_FONT); + hiddenLabel.setHorizontalAlignment(SwingConstants.LEFT); + hiddenLabel.setVerticalTextPosition(SwingConstants.TOP); + + useLegacyGap.addActionListener(new ActionListener() + { + @Override + public void actionPerformed(ActionEvent e) + { + useLegacyGaps_actionPerformed(e); + } + }); + + overviewPanel.setLayout(new GridBagLayout()); + GridBagConstraints c1 = new GridBagConstraints(); + + c1.fill = GridBagConstraints.HORIZONTAL; + c1.gridx = 0; + c1.gridy = 0; + c1.weightx = 1; + c1.ipady = 20; + c1.anchor = GridBagConstraints.FIRST_LINE_START; + overviewPanel.add(useLegacyGap, c1); + + GridBagConstraints c2 = new GridBagConstraints(); + c2.fill = GridBagConstraints.HORIZONTAL; + c2.gridx = 1; + c2.gridy = 0; + c2.insets = new Insets(0, 15, 0, 10); + overviewPanel.add(gapLabel, c2); + + GridBagConstraints c3 = new GridBagConstraints(); + c3.fill = GridBagConstraints.HORIZONTAL; + c3.gridx = 2; + c3.gridy = 0; + c3.insets = new Insets(0, 0, 0, 15); + overviewPanel.add(gapColour, c3); + + GridBagConstraints c4 = new GridBagConstraints(); + c4.fill = GridBagConstraints.HORIZONTAL; + c4.gridx = 0; + c4.gridy = 1; + c4.weightx = 1; + overviewPanel.add(showHiddenAtStart, c4); + + GridBagConstraints c5 = new GridBagConstraints(); + c5.fill = GridBagConstraints.HORIZONTAL; + c5.gridx = 1; + c5.gridy = 1; + c5.insets = new Insets(0, 15, 0, 10); + overviewPanel.add(hiddenLabel, c5); + + GridBagConstraints c6 = new GridBagConstraints(); + c6.fill = GridBagConstraints.HORIZONTAL; + c6.gridx = 2; + c6.gridy = 1; + c6.insets = new Insets(0, 0, 0, 15); + overviewPanel.add(hiddenColour, c6); + + JButton resetButton = new JButton( + MessageManager.getString("label.reset_to_defaults")); + + resetButton.addActionListener(new ActionListener() + { + @Override + public void actionPerformed(ActionEvent e) + { + resetOvDefaults_actionPerformed(e); + } + }); + + GridBagConstraints c7 = new GridBagConstraints(); + c7.fill = GridBagConstraints.NONE; + c7.gridx = 0; + c7.gridy = 2; + c7.insets = new Insets(10, 0, 0, 0); + c7.anchor = GridBagConstraints.WEST; + overviewPanel.add(resetButton, c7); + + // Add padding so the panel doesn't look ridiculous + JPanel spacePanel = new JPanel(); + overviewPanel.add(spacePanel, + new GridBagConstraints(0, 3, 1, 1, 1.0, 1.0, + GridBagConstraints.WEST, GridBagConstraints.BOTH, + new Insets(0, 0, 0, 5), 0, 0)); + + return overviewPanel; + } + + /** * Initialises the Structure tabbed panel. * * @return @@ -959,8 +1124,8 @@ public class GPreferences extends JPanel { structureTab = new JPanel(); - structureTab.setBorder(new TitledBorder(MessageManager - .getString("label.structure_options"))); + structureTab.setBorder(new TitledBorder( + MessageManager.getString("label.structure_options"))); structureTab.setLayout(null); final int width = 400; final int height = 22; @@ -994,8 +1159,8 @@ public class GPreferences extends JPanel ypos += lineSpacing; addSecondaryStructure.setFont(LABEL_FONT); - addSecondaryStructure.setText(MessageManager - .getString("label.autoadd_secstr")); + addSecondaryStructure + .setText(MessageManager.getString("label.autoadd_secstr")); addSecondaryStructure.setBounds(new Rectangle(25, ypos, width, height)); structureTab.add(addSecondaryStructure); @@ -1022,8 +1187,8 @@ public class GPreferences extends JPanel @Override public void actionPerformed(ActionEvent e) { - structureViewer_actionPerformed((String) structViewer - .getSelectedItem()); + structureViewer_actionPerformed( + (String) structViewer.getSelectedItem()); } }); structureTab.add(structViewer); @@ -1033,14 +1198,14 @@ public class GPreferences extends JPanel pathLabel.setFont(new java.awt.Font("SansSerif", 0, 11)); pathLabel.setHorizontalAlignment(SwingConstants.LEFT); pathLabel.setText(MessageManager.getString("label.chimera_path")); - final String tooltip = JvSwingUtils.wrapTooltip(true, - MessageManager.getString("label.chimera_path_tip")); - pathLabel.setToolTipText(tooltip); pathLabel.setBounds(new Rectangle(10, ypos, 140, height)); structureTab.add(pathLabel); chimeraPath.setFont(LABEL_FONT); chimeraPath.setText(""); + final String tooltip = JvSwingUtils.wrapTooltip(true, + MessageManager.getString("label.chimera_path_tip")); + chimeraPath.setToolTipText(tooltip); chimeraPath.setBounds(new Rectangle(160, ypos, 300, height)); chimeraPath.addMouseListener(new MouseAdapter() { @@ -1110,8 +1275,8 @@ public class GPreferences extends JPanel JFileChooser chooser = new JFileChooser(); // chooser.setFileView(new JalviewFileView()); - chooser.setDialogTitle(MessageManager - .getString("label.open_local_file")); + chooser.setDialogTitle( + MessageManager.getString("label.open_local_file")); chooser.setToolTipText(MessageManager.getString("action.open")); int value = chooser.showOpenDialog(this); @@ -1151,8 +1316,8 @@ public class GPreferences extends JPanel private JPanel initVisualTab() { JPanel visualTab = new JPanel(); - visualTab.setBorder(new TitledBorder(MessageManager - .getString("action.open_new_alignment"))); + visualTab.setBorder(new TitledBorder( + MessageManager.getString("action.open_new_alignment"))); visualTab.setLayout(null); fullScreen.setFont(LABEL_FONT); fullScreen.setHorizontalAlignment(SwingConstants.RIGHT); @@ -1187,21 +1352,21 @@ public class GPreferences extends JPanel showGroupbits.setFont(LABEL_FONT); showGroupbits.setHorizontalAlignment(SwingConstants.RIGHT); showGroupbits.setHorizontalTextPosition(SwingConstants.LEFT); - showGroupbits.setText(MessageManager.getString("action.show_group") - + ":"); + showGroupbits + .setText(MessageManager.getString("action.show_group") + ":"); JLabel showConsensbits = new JLabel(); showConsensbits.setFont(LABEL_FONT); showConsensbits.setHorizontalAlignment(SwingConstants.RIGHT); showConsensbits.setHorizontalTextPosition(SwingConstants.LEFT); - showConsensbits.setText(MessageManager.getString("label.consensus") - + ":"); + showConsensbits + .setText(MessageManager.getString("label.consensus") + ":"); showConsensHistogram.setEnabled(false); showConsensHistogram.setFont(LABEL_FONT); showConsensHistogram.setHorizontalAlignment(SwingConstants.RIGHT); showConsensHistogram.setHorizontalTextPosition(SwingConstants.LEFT); showConsensHistogram.setSelected(true); - showConsensHistogram.setText(MessageManager - .getString("label.histogram")); + showConsensHistogram + .setText(MessageManager.getString("label.histogram")); showConsensLogo.setEnabled(false); showConsensLogo.setFont(LABEL_FONT); showConsensLogo.setHorizontalAlignment(SwingConstants.RIGHT); @@ -1219,22 +1384,22 @@ public class GPreferences extends JPanel showGroupConservation.setHorizontalAlignment(SwingConstants.RIGHT); showGroupConservation.setHorizontalTextPosition(SwingConstants.LEFT); showGroupConservation.setSelected(true); - showGroupConservation.setText(MessageManager - .getString("label.conservation")); + showGroupConservation + .setText(MessageManager.getString("label.conservation")); showNpTooltip.setEnabled(true); showNpTooltip.setFont(LABEL_FONT); showNpTooltip.setHorizontalAlignment(SwingConstants.RIGHT); showNpTooltip.setHorizontalTextPosition(SwingConstants.LEFT); showNpTooltip.setSelected(true); - showNpTooltip.setText(MessageManager - .getString("label.non_positional_features")); + showNpTooltip.setText( + MessageManager.getString("label.non_positional_features")); showDbRefTooltip.setEnabled(true); showDbRefTooltip.setFont(LABEL_FONT); showDbRefTooltip.setHorizontalAlignment(SwingConstants.RIGHT); showDbRefTooltip.setHorizontalTextPosition(SwingConstants.LEFT); showDbRefTooltip.setSelected(true); - showDbRefTooltip.setText(MessageManager - .getString("label.database_references")); + showDbRefTooltip + .setText(MessageManager.getString("label.database_references")); annotations.setFont(LABEL_FONT); annotations.setHorizontalAlignment(SwingConstants.RIGHT); annotations.setHorizontalTextPosition(SwingConstants.LEFT); @@ -1269,8 +1434,8 @@ public class GPreferences extends JPanel showUnconserved.setHorizontalAlignment(SwingConstants.RIGHT); showUnconserved.setHorizontalTextPosition(SwingConstants.LEFT); showUnconserved.setSelected(true); - showUnconserved.setText(MessageManager - .getString("action.show_unconserved")); + showUnconserved + .setText(MessageManager.getString("action.show_unconserved")); showUnconserved.addActionListener(new ActionListener() { @Override @@ -1308,10 +1473,10 @@ public class GPreferences extends JPanel scaleProteinToCdna.setFont(LABEL_FONT); scaleProteinToCdna.setHorizontalAlignment(SwingConstants.RIGHT); scaleProteinToCdna.setHorizontalTextPosition(SwingConstants.LEADING); - scaleProteinToCdna.setText(MessageManager - .getString("label.scale_protein_to_cdna")); - scaleProteinToCdna.setToolTipText(MessageManager - .getString("label.scale_protein_to_cdna_tip")); + scaleProteinToCdna.setText( + MessageManager.getString("label.scale_protein_to_cdna")); + scaleProteinToCdna.setToolTipText( + MessageManager.getString("label.scale_protein_to_cdna_tip")); JLabel gapLabel = new JLabel(); gapLabel.setFont(LABEL_FONT); gapLabel.setHorizontalAlignment(SwingConstants.RIGHT); @@ -1339,6 +1504,9 @@ public class GPreferences extends JPanel startupCheckbox.setSelected(true); startupFileTextfield.setFont(LABEL_FONT); startupFileTextfield.setBounds(new Rectangle(172, 310, 330, 20)); + final String tooltip = JvSwingUtils.wrapTooltip(true, + MessageManager.getString("label.double_click_to_browse")); + startupFileTextfield.setToolTipText(tooltip); startupFileTextfield.addMouseListener(new MouseAdapter() { @Override @@ -1403,12 +1571,10 @@ public class GPreferences extends JPanel autoAnnotSettings.add(showConsensbits); autoAnnotSettings.add(showConsensHistogram); autoAnnotSettings.add(showConsensLogo); - - JPanel tooltipSettings = new JPanel(); - tooltipSettings.setBorder(new TitledBorder(MessageManager - .getString("label.sequence_id_tooltip"))); + tooltipSettings.setBorder(new TitledBorder( + MessageManager.getString("label.sequence_id_tooltip"))); tooltipSettings.setBounds(173, 140, 220, 62); tooltipSettings.setLayout(new GridLayout(2, 1)); tooltipSettings.add(showDbRefTooltip); @@ -1427,11 +1593,11 @@ public class GPreferences extends JPanel idItalics.setFont(LABEL_FONT_ITALIC); idItalics.setHorizontalAlignment(SwingConstants.RIGHT); idItalics.setHorizontalTextPosition(SwingConstants.LEADING); - idItalics.setText(MessageManager - .getString("label.sequence_name_italics")); + idItalics.setText( + MessageManager.getString("label.sequence_name_italics")); openoverv.setFont(LABEL_FONT); - openoverv.setActionCommand(MessageManager - .getString("label.open_overview")); + openoverv.setActionCommand( + MessageManager.getString("label.open_overview")); openoverv.setHorizontalAlignment(SwingConstants.RIGHT); openoverv.setHorizontalTextPosition(SwingConstants.LEFT); openoverv.setText(MessageManager.getString("label.open_overview")); @@ -1484,12 +1650,28 @@ public class GPreferences extends JPanel { } + protected void gapColour_actionPerformed(JPanel panel) + { + } + + protected void hiddenColour_actionPerformed(JPanel panel) + { + } + protected void showunconserved_actionPerformed(ActionEvent e) { // TODO Auto-generated method stub } + protected void useLegacyGaps_actionPerformed(ActionEvent e) + { + } + + protected void resetOvDefaults_actionPerformed(ActionEvent e) + { + } + /** * DOCUMENT ME! * @@ -1564,8 +1746,8 @@ public class GPreferences extends JPanel /** * Customer renderer for JTable: supports column of radio buttons */ - public class RadioButtonRenderer extends JRadioButton implements - TableCellRenderer + public class RadioButtonRenderer extends JRadioButton + implements TableCellRenderer { public RadioButtonRenderer() { @@ -1582,14 +1764,14 @@ public class GPreferences extends JPanel // set colours to match rest of table if (isSelected) - { - setBackground(table.getSelectionBackground()); - setForeground(table.getSelectionForeground()); - } - else - { - setBackground(table.getBackground()); - setForeground(table.getForeground()); + { + setBackground(table.getSelectionBackground()); + setForeground(table.getSelectionForeground()); + } + else + { + setBackground(table.getBackground()); + setForeground(table.getForeground()); } return this; } @@ -1599,37 +1781,37 @@ public class GPreferences extends JPanel * Customer cell editor for JTable: supports column of radio buttons in * conjunction with renderer */ - public class RadioButtonEditor extends AbstractCellEditor implements - TableCellEditor - { - private JRadioButton button = new JRadioButton(); + public class RadioButtonEditor extends AbstractCellEditor + implements TableCellEditor + { + private JRadioButton button = new JRadioButton(); - public RadioButtonEditor() - { + public RadioButtonEditor() + { button.setHorizontalAlignment(SwingConstants.CENTER); this.button.addActionListener(new ActionListener() + { + @Override + public void actionPerformed(ActionEvent e) { - @Override - public void actionPerformed(ActionEvent e) - { - fireEditingStopped(); - } - }); - } + fireEditingStopped(); + } + }); + } - @Override - public Component getTableCellEditorComponent(JTable table, - Object value, boolean isSelected, int row, int column) - { + @Override + public Component getTableCellEditorComponent(JTable table, Object value, + boolean isSelected, int row, int column) + { button.setSelected((boolean) value); - return button; - } + return button; + } - @Override - public Object getCellEditorValue() - { + @Override + public Object getCellEditorValue() + { return button.isSelected(); - } + } } }