X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPreferences.java;h=a1ec0a9669f46599e0a60c1a7b147ff828bdce56;hb=f441357783f32298b738d32d5c87000ac0e33768;hp=58c774306f7b707e2b5714f37032108064359ea4;hpb=92f2bdf5a7a89ceefe2bff76ca75414cf0fb633c;p=jalview.git

diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index 58c7743..a1ec0a9 100755
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -106,6 +106,8 @@ public class GPreferences extends JPanel
   protected JCheckBox smoothFont = new JCheckBox();
   JPanel calcTab = new JPanel();
   protected JCheckBox autoCalculateConsCheck = new JCheckBox();
+  protected JCheckBox padGaps = new JCheckBox();
+  protected JCheckBox modellerOutput = new JCheckBox();
   /**
      * Creates a new GPreferences object.
      */
@@ -360,8 +362,15 @@ public class GPreferences extends JPanel
     smoothFont.setHorizontalTextPosition(SwingConstants.LEADING);
     smoothFont.setText("Smooth Font");
     calcTab.setLayout(null);
+    autoCalculateConsCheck.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
     autoCalculateConsCheck.setText("AutoCalculate Consensus");
-    autoCalculateConsCheck.setBounds(new Rectangle(16, 29, 209, 23));
+    autoCalculateConsCheck.setBounds(new Rectangle(21, 52, 209, 23));
+    padGaps.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+    padGaps.setText("Pad gaps when editing");
+    padGaps.setBounds(new Rectangle(22, 94, 168, 23));
+    modellerOutput.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+    modellerOutput.setText("Use Modeller Output");
+    modellerOutput.setBounds(new Rectangle(228, 226, 168, 23));
     jPanel2.add(fullScreen);
 
     jPanel2.add(annotations);
@@ -444,8 +453,10 @@ public class GPreferences extends JPanel
     jPanel11.add(pfamjv);
     jPanel11.add(pileupjv);
     jPanel11.add(pirjv);
-    tabbedPane.add(calcTab, "Calculations");
+    exportTab.add(modellerOutput);
+    tabbedPane.add(calcTab, "Editing");
     calcTab.add(autoCalculateConsCheck);
+    calcTab.add(padGaps);
 
     exportTab.add(epsLabel);
     exportTab.add(epsRendering);