X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPreferences.java;h=ccca6a6e35250febcbdb134a4e2a00dd811d3c10;hb=9c7f95a88517db15d88be3287addaf884e764d16;hp=2ab6edd284693b586dc7f6ffcbcc59a8203bd23d;hpb=588042b69abf8e60bcc950b24c283933c7dd422f;p=jalview.git diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java index 2ab6edd..ccca6a6 100755 --- a/src/jalview/jbgui/GPreferences.java +++ b/src/jalview/jbgui/GPreferences.java @@ -19,190 +19,545 @@ package jalview.jbgui; import java.awt.*; -import java.awt.event.ActionEvent; -import java.awt.event.ActionListener; -import java.awt.event.MouseAdapter; -import java.awt.event.MouseEvent; import javax.swing.*; import javax.swing.border.TitledBorder; +import java.awt.event.*; +import javax.swing.event.*; -public class GPreferences extends JPanel { - JTabbedPane visaulTab = new JTabbedPane(); - JPanel visual = new JPanel(); +/** + * DOCUMENT ME! + * + * @author $author$ + * @version $Revision$ + */ +public class GPreferences extends JPanel +{ + JTabbedPane tabbedPane = new JTabbedPane(); + JButton ok = new JButton(); JButton cancel = new JButton(); - JPanel jPanel1 = new JPanel(); + JPanel okCancelPanel = new JPanel(); BorderLayout borderLayout1 = new BorderLayout(); protected JCheckBox quality = new JCheckBox(); - JPanel jPanel2 = new JPanel(); - TitledBorder titledBorder1 = new TitledBorder("Open new alignment"); - protected JCheckBox fullID = new JCheckBox(); + JPanel visualTab = new JPanel(); + protected JCheckBox dbRef = new JCheckBox(); protected JCheckBox fullScreen = new JCheckBox(); protected JCheckBox conservation = new JCheckBox(); protected JCheckBox identity = new JCheckBox(); protected JCheckBox annotations = new JCheckBox(); - JLabel jLabel1 = new JLabel(); + JLabel gapLabel = new JLabel(); protected JComboBox colour = new JComboBox(); - JLabel jLabel2 = new JLabel(); - JLabel jLabel3 = new JLabel(); + JLabel colourLabel = new JLabel(); + JLabel fontLabel = new JLabel(); protected JComboBox fontSizeCB = new JComboBox(); protected JComboBox fontStyleCB = new JComboBox(); protected JComboBox fontNameCB = new JComboBox(); protected JComboBox gapSymbolCB = new JComboBox(); protected JCheckBox startupCheckbox = new JCheckBox(); protected JTextField startupFileTextfield = new JTextField(); - - public GPreferences() { - try { + JPanel connectTab = new JPanel(); + JLabel serverLabel = new JLabel(); + protected JList linkURLList = new JList(); + protected JTextField proxyServerTB = new JTextField(); + protected JTextField proxyPortTB = new JTextField(); + JLabel portLabel = new JLabel(); + JLabel browserLabel = new JLabel(); + protected JTextField defaultBrowser = new JTextField(); + JButton newLink = new JButton(); + JButton editLink = new JButton(); + JButton deleteLink = new JButton(); + JScrollPane linkScrollPane = new JScrollPane(); + JPanel linkPanel = new JPanel(); + BorderLayout borderLayout2 = new BorderLayout(); + JPanel editLinkButtons = new JPanel(); + GridLayout gridLayout1 = new GridLayout(); + protected JList linkNameList = new JList(); + JPanel linkPanel2 = new JPanel(); + BorderLayout borderLayout3 = new BorderLayout(); + protected JCheckBox useProxy = new JCheckBox(); + JPanel jPanel1 = new JPanel(); + TitledBorder titledBorder1 = new TitledBorder("Proxy Server"); + TitledBorder titledBorder2 = new TitledBorder("File Output"); + GridBagLayout gridBagLayout2 = new GridBagLayout(); + GridBagLayout gridBagLayout1 = new GridBagLayout(); + GridBagLayout gridBagLayout3 = new GridBagLayout(); + protected JComboBox sortby = new JComboBox(); + JLabel sortLabel = new JLabel(); + JPanel jPanel2 = new JPanel(); + GridLayout gridLayout2 = new GridLayout(); + JPanel jPanel3 = new JPanel(); + JPanel exportTab = new JPanel(); + JLabel epsLabel = new JLabel(); + protected JComboBox epsRendering = new JComboBox(); + JLabel jLabel1 = new JLabel(); + JLabel jLabel2 = new JLabel(); + protected JCheckBox pileupdb = new JCheckBox(); + protected JCheckBox fastadb = new JCheckBox(); + protected JCheckBox blcjv = new JCheckBox(); + protected JCheckBox pileupjv = new JCheckBox(); + protected JCheckBox msfdb = new JCheckBox(); + protected JCheckBox pfamdb = new JCheckBox(); + protected JCheckBox clustaljv = new JCheckBox(); + protected JCheckBox msfjv = new JCheckBox(); + protected JCheckBox blcdb = new JCheckBox(); + protected JCheckBox clustaldb = new JCheckBox(); + protected JCheckBox fastajv = new JCheckBox(); + protected JCheckBox pfamjv = new JCheckBox(); + JLabel jLabel10 = new JLabel(); + JLabel jLabel11 = new JLabel(); + FlowLayout flowLayout1 = new FlowLayout(); + protected JCheckBox pirdb = new JCheckBox(); + protected JCheckBox pirjv = new JCheckBox(); + JPanel jPanel11 = new JPanel(); + GridLayout gridLayout3 = new GridLayout(); + Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11); + protected JCheckBox seqLimit = new JCheckBox(); + /** + * Creates a new GPreferences object. + */ + public GPreferences() + { + try + { jbInit(); - } catch (Exception ex) { + } + catch (Exception ex) + { ex.printStackTrace(); } } - private void jbInit() throws Exception { + /** + * DOCUMENT ME! + * + * @throws Exception DOCUMENT ME! + */ + private void jbInit() throws Exception + { this.setLayout(borderLayout1); ok.setText("OK"); - ok.addActionListener(new ActionListener() { - public void actionPerformed(ActionEvent e) { + ok.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { ok_actionPerformed(e); } }); cancel.setText("Cancel"); - cancel.addActionListener(new ActionListener() { - public void actionPerformed(ActionEvent e) { + cancel.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { cancel_actionPerformed(e); } }); - visual.setLayout(null); quality.setEnabled(false); - quality.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + quality.setFont(verdana11); quality.setHorizontalAlignment(SwingConstants.RIGHT); quality.setHorizontalTextPosition(SwingConstants.LEFT); quality.setSelected(true); quality.setText("Quality"); - quality.setBounds(new Rectangle(248, 53, 81, 23)); - jPanel2.setBorder(titledBorder1); - jPanel2.setBounds(new Rectangle(9, 20, 442, 241)); - jPanel2.setLayout(null); - fullID.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - fullID.setHorizontalAlignment(SwingConstants.RIGHT); - fullID.setHorizontalTextPosition(SwingConstants.LEFT); - fullID.setText("Full Sequence ID"); - fullID.setBounds(new Rectangle(9, 78, 129, 23)); - fullScreen.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + visualTab.setBorder(new TitledBorder("Open new alignment")); + visualTab.setLayout(null); + dbRef.setFont(verdana11); + dbRef.setHorizontalAlignment(SwingConstants.RIGHT); + dbRef.setHorizontalTextPosition(SwingConstants.LEFT); + dbRef.setMargin(new Insets(4, 2, 2, 0)); + dbRef.setText("DB prefix (DB|AccNo)"); + fullScreen.setFont(verdana11); fullScreen.setHorizontalAlignment(SwingConstants.RIGHT); fullScreen.setHorizontalTextPosition(SwingConstants.LEFT); - fullScreen.setText("Maximise Window"); - fullScreen.setBounds(new Rectangle(5, 29, 132, 23)); - conservation.setEnabled(false); - conservation.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + fullScreen.setMargin(new Insets(2, 2, 2, 0)); + fullScreen.setText("Maximise Window"); + conservation.setEnabled(false); + conservation.setFont(verdana11); conservation.setHorizontalAlignment(SwingConstants.RIGHT); conservation.setHorizontalTextPosition(SwingConstants.LEFT); conservation.setSelected(true); conservation.setText("Conservation"); - conservation.setBounds(new Rectangle(137, 53, 113, 23)); - identity.setEnabled(false); - identity.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + identity.setEnabled(false); + identity.setFont(verdana11); identity.setHorizontalAlignment(SwingConstants.RIGHT); identity.setHorizontalTextPosition(SwingConstants.LEFT); identity.setSelected(true); identity.setText("Consensus"); - identity.setBounds(new Rectangle(326, 53, 99, 23)); - annotations.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + annotations.setFont(verdana11); annotations.setHorizontalAlignment(SwingConstants.RIGHT); annotations.setHorizontalTextPosition(SwingConstants.LEFT); - annotations.setSelected(true); + annotations.setMargin(new Insets(2, 4, 2, 0)); + annotations.setSelected(true); annotations.setText("Show Annotations"); - annotations.setBounds(new Rectangle(10, 53, 128, 23)); - annotations.addActionListener(new ActionListener() { - public void actionPerformed(ActionEvent e) { + annotations.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { annotations_actionPerformed(e); } }); - jLabel1.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - jLabel1.setHorizontalAlignment(SwingConstants.RIGHT); - jLabel1.setText("Gap Symbol"); - jLabel1.setBounds(new Rectangle(41, 142, 76, 15)); - colour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - colour.setBounds(new Rectangle(121, 168, 154, 21)); - jLabel2.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - jLabel2.setHorizontalAlignment(SwingConstants.RIGHT); - jLabel2.setText("Colour"); - jLabel2.setBounds(new Rectangle(60, 172, 58, 15)); - jLabel3.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - jLabel3.setHorizontalAlignment(SwingConstants.RIGHT); - jLabel3.setText("Font"); - jLabel3.setBounds(new Rectangle(83, 114, 34, 15)); - fontSizeCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - fontSizeCB.setBounds(new Rectangle(304, 109, 49, 21)); - fontStyleCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - fontStyleCB.setBounds(new Rectangle(353, 109, 80, 21)); - fontNameCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - fontNameCB.setBounds(new Rectangle(121, 109, 183, 21)); - gapSymbolCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - gapSymbolCB.setBounds(new Rectangle(121, 140, 67, 21)); + gapLabel.setFont(verdana11); + gapLabel.setHorizontalAlignment(SwingConstants.RIGHT); + gapLabel.setText("Gap Symbol "); + colour.setFont(verdana11); + colour.setBounds(new Rectangle(170, 170, 155, 21)); + colourLabel.setFont(verdana11); + colourLabel.setHorizontalAlignment(SwingConstants.RIGHT); + colourLabel.setText("Colour "); + fontLabel.setFont(verdana11); + fontLabel.setHorizontalAlignment(SwingConstants.RIGHT); + fontLabel.setText("Font "); + fontSizeCB.setFont(verdana11); + fontSizeCB.setBounds(new Rectangle(317, 111, 49, 21)); + fontStyleCB.setFont(verdana11); + fontStyleCB.setBounds(new Rectangle(365, 111, 70, 21)); + fontNameCB.setFont(verdana11); + fontNameCB.setBounds(new Rectangle(170, 111, 147, 21)); + gapSymbolCB.setFont(verdana11); + gapSymbolCB.setBounds(new Rectangle(170, 141, 69, 21)); startupCheckbox.setText("Open file"); - startupCheckbox.setBounds(new Rectangle(4, 200, 115, 23)); - startupCheckbox.addActionListener(new ActionListener() { - public void actionPerformed(ActionEvent e) { - jCheckBox1_actionPerformed(e); - } - }); - startupCheckbox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + startupCheckbox.setFont(verdana11); startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT); startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT); startupCheckbox.setSelected(true); - startupFileTextfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); - startupFileTextfield.setBounds(new Rectangle(122, 202, 309, 20)); - startupFileTextfield.addMouseListener(new MouseAdapter() { - public void mouseClicked(MouseEvent e) { - startupFileTextfield_mouseClicked(); + startupFileTextfield.setFont(verdana11); + startupFileTextfield.setBounds(new Rectangle(170, 232, 271, 20)); + startupFileTextfield.addMouseListener(new MouseAdapter() + { + public void mouseClicked(MouseEvent e) + { + if (e.getClickCount() > 1) + { + startupFileTextfield_mouseClicked(); + } } }); - jPanel2.add(annotations); - jPanel2.add(conservation); - jPanel2.add(quality); - jPanel2.add(fullID); - jPanel2.add(gapSymbolCB); - jPanel2.add(jLabel1); - jPanel2.add(fontNameCB); - jPanel2.add(jLabel2); - jPanel2.add(jLabel3); - jPanel2.add(colour); - jPanel2.add(fontSizeCB); - jPanel2.add(fontStyleCB); - jPanel2.add(identity); - jPanel2.add(fullScreen); - jPanel2.add(startupCheckbox); - jPanel2.add(startupFileTextfield); - jPanel1.add(ok); - jPanel1.add(cancel); - this.add(visaulTab, java.awt.BorderLayout.CENTER); - visaulTab.add(visual, "visual"); - visual.add(jPanel2); - this.add(jPanel1, java.awt.BorderLayout.SOUTH); - - DefaultListCellRenderer dlcr = new DefaultListCellRenderer(); + connectTab.setLayout(gridBagLayout3); + serverLabel.setText("Address"); + serverLabel.setHorizontalAlignment(SwingConstants.RIGHT); + serverLabel.setFont(verdana11); + proxyServerTB.setFont(verdana11); + proxyPortTB.setFont(verdana11); + portLabel.setFont(verdana11); + portLabel.setHorizontalAlignment(SwingConstants.RIGHT); + portLabel.setText("Port"); + browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11)); + browserLabel.setHorizontalAlignment(SwingConstants.TRAILING); + browserLabel.setText("Default Browser (Unix)"); + defaultBrowser.setFont(verdana11); + defaultBrowser.setText(""); + newLink.setText("New"); + newLink.addActionListener(new java.awt.event.ActionListener() { + public void actionPerformed(ActionEvent e) { + newLink_actionPerformed(e); + } + }); + editLink.setText("Edit"); + editLink.addActionListener(new java.awt.event.ActionListener() { + public void actionPerformed(ActionEvent e) { + editLink_actionPerformed(e); + } + }); + deleteLink.setText("Delete"); + deleteLink.addActionListener(new java.awt.event.ActionListener() { + public void actionPerformed(ActionEvent e) { + deleteLink_actionPerformed(e); + } + }); + + linkURLList.addListSelectionListener(new ListSelectionListener() + { + public void valueChanged(ListSelectionEvent e) + { + int index = linkURLList.getSelectedIndex(); + linkNameList.setSelectedIndex(index); + } + }); + + linkNameList.addListSelectionListener(new ListSelectionListener() + { + public void valueChanged(ListSelectionEvent e) + { + int index = linkNameList.getSelectedIndex(); + linkURLList.setSelectedIndex(index); + } + }); + + linkScrollPane.setBorder(null); + linkPanel.setBorder(new TitledBorder("URL link from Sequence ID")); + linkPanel.setLayout(borderLayout2); + editLinkButtons.setLayout(gridLayout1); + gridLayout1.setRows(3); + linkNameList.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11)); + linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION); + linkPanel2.setLayout(borderLayout3); + linkURLList.setFont(verdana11); + linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION); + + defaultBrowser.addMouseListener(new MouseAdapter() + { + public void mouseClicked(MouseEvent e) + { + if (e.getClickCount() > 1) + { + defaultBrowser_mouseClicked(e); + } + } + }); + useProxy.setFont(verdana11); + useProxy.setHorizontalAlignment(SwingConstants.RIGHT); + useProxy.setHorizontalTextPosition(SwingConstants.LEADING); + useProxy.setText("Use a proxy server"); + useProxy.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + useProxy_actionPerformed(); + } + }); + jPanel1.setBorder(titledBorder1); + jPanel1.setLayout(gridBagLayout1); + sortby.setFont(verdana11); + sortby.setBounds(new Rectangle(170, 200, 155, 21)); + sortLabel.setFont(verdana11); + sortLabel.setHorizontalAlignment(SwingConstants.RIGHT); + sortLabel.setText("Sort by "); + jPanel2.setBounds(new Rectangle(7, 17, 158, 242)); + jPanel2.setLayout(gridLayout2); + gridLayout2.setRows(8); + jPanel3.setBounds(new Rectangle(168, 47, 274, 26)); + exportTab.setLayout(null); + epsLabel.setFont(verdana11); + epsLabel.setHorizontalAlignment(SwingConstants.RIGHT); + epsLabel.setText("EPS Rendering Style"); + epsLabel.setBounds(new Rectangle(9, 31, 140, 24)); + epsRendering.setFont(verdana11); + epsRendering.setBounds(new Rectangle(154, 34, 187, 21)); + jLabel1.setFont(verdana11); + jLabel1.setHorizontalAlignment(SwingConstants.CENTER); + jLabel1.setText("/start-end suffix"); + jLabel2.setFont(verdana11); + jLabel2.setHorizontalAlignment(SwingConstants.RIGHT); + jLabel2.setHorizontalTextPosition(SwingConstants.RIGHT); + jLabel2.setText("Database ref prefix"); + jLabel1.setFont(verdana11); + jLabel2.setFont(verdana11); + fastajv.setFont(verdana11); + fastajv.setHorizontalAlignment(SwingConstants.CENTER); + jLabel10.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11)); + jLabel10.setHorizontalAlignment(SwingConstants.RIGHT); + jLabel10.setText("(Uniprot|P02055)"); + jLabel11.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11)); + jLabel11.setHorizontalAlignment(SwingConstants.CENTER); + jLabel11.setText("(/15-380)"); + clustaldb.setFont(verdana11); + clustaldb.setHorizontalAlignment(SwingConstants.RIGHT); + clustaldb.setHorizontalTextPosition(SwingConstants.LEFT); + clustaldb.setText("Clustal "); + blcdb.setFont(verdana11); + blcdb.setHorizontalAlignment(SwingConstants.RIGHT); + blcdb.setHorizontalTextPosition(SwingConstants.LEFT); + blcdb.setText("BLC "); + fastadb.setFont(verdana11); + fastadb.setHorizontalAlignment(SwingConstants.RIGHT); + fastadb.setHorizontalTextPosition(SwingConstants.LEFT); + fastadb.setText("Fasta "); + msfdb.setFont(verdana11); + msfdb.setHorizontalTextPosition(SwingConstants.LEFT); + msfdb.setHorizontalAlignment(SwingConstants.RIGHT); + msfdb.setText("MSF "); + pfamdb.setFont(verdana11); + pfamdb.setHorizontalAlignment(SwingConstants.RIGHT); + pfamdb.setHorizontalTextPosition(SwingConstants.LEFT); + pfamdb.setText("PFAM "); + pileupdb.setFont(verdana11); + pileupdb.setHorizontalAlignment(SwingConstants.RIGHT); + pileupdb.setHorizontalTextPosition(SwingConstants.LEFT); + pileupdb.setText("Pileup "); + msfjv.setFont(verdana11); + msfjv.setHorizontalAlignment(SwingConstants.CENTER); + pirdb.setFont(verdana11); + pirdb.setHorizontalAlignment(SwingConstants.RIGHT); + pirdb.setHorizontalTextPosition(SwingConstants.LEFT); + pirdb.setText("PIR "); + jPanel11.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + jPanel11.setBorder(titledBorder2); + jPanel11.setBounds(new Rectangle(18, 72, 325, 182)); + jPanel11.setLayout(gridLayout3); + gridLayout3.setColumns(2); + gridLayout3.setRows(9); + blcjv.setFont(verdana11); + blcjv.setHorizontalAlignment(SwingConstants.CENTER); + clustaljv.setFont(verdana11); + clustaljv.setHorizontalAlignment(SwingConstants.CENTER); + pfamjv.setFont(verdana11); + pfamjv.setHorizontalAlignment(SwingConstants.CENTER); + pileupjv.setFont(verdana11); + pileupjv.setHorizontalAlignment(SwingConstants.CENTER); + pirjv.setFont(verdana11); + pirjv.setHorizontalAlignment(SwingConstants.CENTER); + seqLimit.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + seqLimit.setHorizontalTextPosition(SwingConstants.LEADING); + seqLimit.setText("Sequence Limits (/1-350)"); + seqLimit.setBounds(new Rectangle(172, 82, 195, 23)); + jPanel2.add(fullScreen); + jPanel2.add(annotations); + jPanel2.add(dbRef); + jPanel2.add(fontLabel); + jPanel2.add(gapLabel); + jPanel2.add(colourLabel); + jPanel2.add(sortLabel); + jPanel2.add(startupCheckbox); + visualTab.add(gapSymbolCB); + visualTab.add(colour); + visualTab.add(seqLimit); + visualTab.add(jPanel3); + jPanel3.add(conservation); + jPanel3.add(identity); + jPanel3.add(quality); + visualTab.add(sortby); + visualTab.add(startupFileTextfield); + visualTab.add(fontNameCB); + visualTab.add(fontSizeCB); + visualTab.add(fontStyleCB); + visualTab.add(jPanel2); + linkPanel.add(editLinkButtons, BorderLayout.EAST); + editLinkButtons.add(newLink, null); + editLinkButtons.add(editLink, null); + editLinkButtons.add(deleteLink, null); + linkPanel.add(linkScrollPane, BorderLayout.CENTER); + linkScrollPane.getViewport().add(linkPanel2, null); + linkPanel2.add(linkURLList, BorderLayout.CENTER); + linkPanel2.add(linkNameList, BorderLayout.WEST); + okCancelPanel.add(ok); + okCancelPanel.add(cancel); + this.add(tabbedPane, java.awt.BorderLayout.CENTER); + + this.add(okCancelPanel, java.awt.BorderLayout.SOUTH); + jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0 + , GridBagConstraints.WEST, GridBagConstraints.NONE, + new Insets(0, 2, 4, 0), 5, 0)); + jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0 + , GridBagConstraints.WEST, + GridBagConstraints.NONE, + new Insets(0, 0, 4, 0), 11, 6)); + connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0 + , GridBagConstraints.CENTER, GridBagConstraints.BOTH, + new Insets(16, 0, 0, 12), 359, -17)); + connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0 + , GridBagConstraints.CENTER, GridBagConstraints.BOTH, + new Insets(21, 0, 35, 12), 4, 6)); + connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0 + , GridBagConstraints.WEST, GridBagConstraints.NONE, + new Insets(16, 0, 0, 0), 5, 1)); + jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0 + , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, + new Insets(0, 2, 4, 2), 54, 1)); + jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0 + , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, + new Insets(0, 2, 4, 0), 263, 1)); + connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0 + , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, + new Insets(15, 0, 0, 15), 307, 1)); + + + jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0 + , GridBagConstraints.WEST, + GridBagConstraints.NONE, + new Insets(0, 2, 5, 185), 2, + -4)); + DefaultListCellRenderer dlcr = new DefaultListCellRenderer(); dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER); gapSymbolCB.setRenderer(dlcr); - } - public void ok_actionPerformed(ActionEvent e) { - } + tabbedPane.add(visualTab, "Visual"); + tabbedPane.add(connectTab,"Connections"); + tabbedPane.add(exportTab, "Output"); + jPanel11.add(jLabel2); + jPanel11.add(jLabel1); + jPanel11.add(jLabel10); + jPanel11.add(jLabel11); + jPanel11.add(blcdb); + jPanel11.add(blcjv); + jPanel11.add(clustaldb); + jPanel11.add(clustaljv); + jPanel11.add(fastadb); + jPanel11.add(fastajv); + jPanel11.add(msfdb); + jPanel11.add(msfjv); + jPanel11.add(pfamdb); + jPanel11.add(pfamjv); + jPanel11.add(pileupdb); + jPanel11.add(pileupjv); + jPanel11.add(pirdb); + jPanel11.add(pirjv); + exportTab.add(epsLabel); + exportTab.add(epsRendering); + exportTab.add(jPanel11); + } - public void cancel_actionPerformed(ActionEvent e) { + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void ok_actionPerformed(ActionEvent e) + { } - public void annotations_actionPerformed(ActionEvent e) { + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void cancel_actionPerformed(ActionEvent e) + { } - public void jCheckBox1_actionPerformed(ActionEvent e) { + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void annotations_actionPerformed(ActionEvent e) + { } - public void startupFileTextfield_mouseClicked() { + + /** + * DOCUMENT ME! + */ + public void startupFileTextfield_mouseClicked() + { } + + + public void newLink_actionPerformed(ActionEvent e) { + + } + + public void editLink_actionPerformed(ActionEvent e) { + + } + + public void deleteLink_actionPerformed(ActionEvent e) { + + } + + public void defaultBrowser_mouseClicked(MouseEvent e) + { + + } + + public void linkURLList_keyTyped(KeyEvent e) + { + + } + + public void useProxy_actionPerformed() + { + proxyServerTB.setEnabled(useProxy.isSelected()); + proxyPortTB.setEnabled(useProxy.isSelected()); + } }