X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGPreferences.java;h=dad0f7f455093b2908926f50d35b545fc3d84725;hb=d704670a936df11fbaf75abbb6d07493d70993a9;hp=2b194bf36078d4155f5b2a8e6992328acf6284c2;hpb=3b20f512421e707431c326189dbf7d8755968baa;p=jalview.git diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java index 2b194bf..dad0f7f 100755 --- a/src/jalview/jbgui/GPreferences.java +++ b/src/jalview/jbgui/GPreferences.java @@ -1,32 +1,28 @@ /* -* Jalview - A Sequence Alignment Editor and Viewer -* Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle -* -* This program is free software; you can redistribute it and/or -* modify it under the terms of the GNU General Public License -* as published by the Free Software Foundation; either version 2 -* of the License, or (at your option) any later version. -* -* This program is distributed in the hope that it will be useful, -* but WITHOUT ANY WARRANTY; without even the implied warranty of -* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the -* GNU General Public License for more details. -* -* You should have received a copy of the GNU General Public License -* along with this program; if not, write to the Free Software -* Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA -*/ + * Jalview - A Sequence Alignment Editor and Viewer + * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + */ package jalview.jbgui; import java.awt.*; - -import javax.swing.*; -import javax.swing.border.TitledBorder; import java.awt.event.*; +import javax.swing.*; +import javax.swing.border.*; import javax.swing.event.*; -import java.awt.Font; -import java.awt.Rectangle; -import java.awt.Insets; /** * DOCUMENT ME! @@ -34,30 +30,31 @@ import java.awt.Insets; * @author $author$ * @version $Revision$ */ -public class GPreferences extends JPanel +public class GPreferences + extends JPanel { - JTabbedPane tabbedPane = new JTabbedPane(); - - JButton ok = new JButton(); - JButton cancel = new JButton(); - JPanel okCancelPanel = new JPanel(); - BorderLayout borderLayout1 = new BorderLayout(); - protected JCheckBox quality = new JCheckBox(); - JPanel visualTab = new JPanel(); + JTabbedPane tabbedPane = new JTabbedPane(); + + JButton ok = new JButton(); + JButton cancel = new JButton(); + JPanel okCancelPanel = new JPanel(); + BorderLayout borderLayout1 = new BorderLayout(); + protected JCheckBox quality = new JCheckBox(); + JPanel visualTab = new JPanel(); protected JCheckBox fullScreen = new JCheckBox(); - protected JCheckBox conservation = new JCheckBox(); - protected JCheckBox identity = new JCheckBox(); - protected JCheckBox annotations = new JCheckBox(); - JLabel gapLabel = new JLabel(); - protected JComboBox colour = new JComboBox(); - JLabel colourLabel = new JLabel(); - JLabel fontLabel = new JLabel(); - protected JComboBox fontSizeCB = new JComboBox(); - protected JComboBox fontStyleCB = new JComboBox(); - protected JComboBox fontNameCB = new JComboBox(); - protected JComboBox gapSymbolCB = new JComboBox(); - protected JCheckBox startupCheckbox = new JCheckBox(); - protected JTextField startupFileTextfield = new JTextField(); + protected JCheckBox conservation = new JCheckBox(); + protected JCheckBox identity = new JCheckBox(); + protected JCheckBox annotations = new JCheckBox(); + JLabel gapLabel = new JLabel(); + protected JComboBox colour = new JComboBox(); + JLabel colourLabel = new JLabel(); + JLabel fontLabel = new JLabel(); + protected JComboBox fontSizeCB = new JComboBox(); + protected JComboBox fontStyleCB = new JComboBox(); + protected JComboBox fontNameCB = new JComboBox(); + protected JComboBox gapSymbolCB = new JComboBox(); + protected JCheckBox startupCheckbox = new JCheckBox(); + protected JTextField startupFileTextfield = new JTextField(); JPanel connectTab = new JPanel(); JLabel serverLabel = new JLabel(); protected JList linkURLList = new JList(); @@ -93,14 +90,14 @@ public class GPreferences extends JPanel JLabel epsLabel = new JLabel(); protected JComboBox epsRendering = new JComboBox(); JLabel jLabel1 = new JLabel(); - protected JCheckBox blcjv = new JCheckBox(); - protected JCheckBox pileupjv = new JCheckBox(); - protected JCheckBox clustaljv = new JCheckBox(); - protected JCheckBox msfjv = new JCheckBox(); - protected JCheckBox fastajv = new JCheckBox(); - protected JCheckBox pfamjv = new JCheckBox(); + protected JCheckBox blcjv = new JCheckBox(); + protected JCheckBox pileupjv = new JCheckBox(); + protected JCheckBox clustaljv = new JCheckBox(); + protected JCheckBox msfjv = new JCheckBox(); + protected JCheckBox fastajv = new JCheckBox(); + protected JCheckBox pfamjv = new JCheckBox(); FlowLayout flowLayout1 = new FlowLayout(); - protected JCheckBox pirjv = new JCheckBox(); + protected JCheckBox pirjv = new JCheckBox(); JPanel jPanel11 = new JPanel(); Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11); protected JCheckBox seqLimit = new JCheckBox(); @@ -115,119 +112,121 @@ public class GPreferences extends JPanel protected JCheckBox wrap = new JCheckBox(); protected JCheckBox rightAlign = new JCheckBox(); protected JCheckBox idItalics = new JCheckBox(); + protected JCheckBox openoverv = new JCheckBox(); /** - * Creates a new GPreferences object. - */ - public GPreferences() + * Creates a new GPreferences object. + */ + public GPreferences() + { + try { - try - { - jbInit(); - } - catch (Exception ex) - { - ex.printStackTrace(); - } + jbInit(); + } + catch (Exception ex) + { + ex.printStackTrace(); } + } - /** - * DOCUMENT ME! - * - * @throws Exception DOCUMENT ME! - */ - private void jbInit() throws Exception + /** + * DOCUMENT ME! + * + * @throws Exception DOCUMENT ME! + */ + private void jbInit() + throws Exception + { + this.setLayout(borderLayout1); + ok.setText("OK"); + ok.addActionListener(new ActionListener() { - this.setLayout(borderLayout1); - ok.setText("OK"); - ok.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent e) - { - ok_actionPerformed(e); - } - }); - cancel.setText("Cancel"); - cancel.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent e) - { - cancel_actionPerformed(e); - } - }); - quality.setEnabled(false); - quality.setFont(verdana11); - quality.setHorizontalAlignment(SwingConstants.RIGHT); - quality.setHorizontalTextPosition(SwingConstants.LEFT); - quality.setSelected(true); - quality.setText("Quality"); + public void actionPerformed(ActionEvent e) + { + ok_actionPerformed(e); + } + }); + cancel.setText("Cancel"); + cancel.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + cancel_actionPerformed(e); + } + }); + quality.setEnabled(false); + quality.setFont(verdana11); + quality.setHorizontalAlignment(SwingConstants.RIGHT); + quality.setHorizontalTextPosition(SwingConstants.LEFT); + quality.setSelected(true); + quality.setText("Quality"); visualTab.setBorder(new TitledBorder("Open new alignment")); visualTab.setLayout(null); fullScreen.setFont(verdana11); - fullScreen.setHorizontalAlignment(SwingConstants.RIGHT); - fullScreen.setHorizontalTextPosition(SwingConstants.LEFT); + fullScreen.setHorizontalAlignment(SwingConstants.RIGHT); + fullScreen.setHorizontalTextPosition(SwingConstants.LEFT); fullScreen.setText("Maximise Window"); conservation.setEnabled(false); - conservation.setFont(verdana11); - conservation.setHorizontalAlignment(SwingConstants.RIGHT); - conservation.setHorizontalTextPosition(SwingConstants.LEFT); - conservation.setSelected(true); - conservation.setText("Conservation"); + conservation.setFont(verdana11); + conservation.setHorizontalAlignment(SwingConstants.RIGHT); + conservation.setHorizontalTextPosition(SwingConstants.LEFT); + conservation.setSelected(true); + conservation.setText("Conservation"); identity.setEnabled(false); - identity.setFont(verdana11); - identity.setHorizontalAlignment(SwingConstants.RIGHT); - identity.setHorizontalTextPosition(SwingConstants.LEFT); - identity.setSelected(true); - identity.setText("Consensus"); + identity.setFont(verdana11); + identity.setHorizontalAlignment(SwingConstants.RIGHT); + identity.setHorizontalTextPosition(SwingConstants.LEFT); + identity.setSelected(true); + identity.setText("Consensus"); annotations.setFont(verdana11); - annotations.setHorizontalAlignment(SwingConstants.RIGHT); - annotations.setHorizontalTextPosition(SwingConstants.LEFT); + annotations.setHorizontalAlignment(SwingConstants.RIGHT); + annotations.setHorizontalTextPosition(SwingConstants.LEFT); annotations.setSelected(true); - annotations.setText("Show Annotations"); + annotations.setText("Show Annotations"); annotations.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent e) - { - annotations_actionPerformed(e); - } - }); - gapLabel.setFont(verdana11); - gapLabel.setHorizontalAlignment(SwingConstants.RIGHT); - gapLabel.setText("Gap Symbol "); + { + public void actionPerformed(ActionEvent e) + { + annotations_actionPerformed(e); + } + }); + gapLabel.setFont(verdana11); + gapLabel.setHorizontalAlignment(SwingConstants.RIGHT); + gapLabel.setText("Gap Symbol "); colour.setFont(verdana11); - colour.setBounds(new Rectangle(172, 225, 155, 21)); - colourLabel.setFont(verdana11); - colourLabel.setHorizontalAlignment(SwingConstants.RIGHT); - colourLabel.setText("Colour "); + colour.setBounds(new Rectangle(172, 225, 155, 21)); + colourLabel.setFont(verdana11); + colourLabel.setHorizontalAlignment(SwingConstants.RIGHT); + colourLabel.setText("Colour "); fontLabel.setFont(verdana11); - fontLabel.setHorizontalAlignment(SwingConstants.RIGHT); - fontLabel.setText("Font "); + fontLabel.setHorizontalAlignment(SwingConstants.RIGHT); + fontLabel.setText("Font "); fontSizeCB.setFont(verdana11); - fontSizeCB.setBounds(new Rectangle(319, 111, 49, 21)); - fontStyleCB.setFont(verdana11); - fontStyleCB.setBounds(new Rectangle(367, 111, 70, 21)); - fontNameCB.setFont(verdana11); - fontNameCB.setBounds(new Rectangle(172, 111, 147, 21)); - gapSymbolCB.setFont(verdana11); - gapSymbolCB.setBounds(new Rectangle(172, 204, 69, 21)); - startupCheckbox.setText("Open file"); + fontSizeCB.setBounds(new Rectangle(319, 111, 49, 21)); + fontStyleCB.setFont(verdana11); + fontStyleCB.setBounds(new Rectangle(367, 111, 70, 21)); + fontNameCB.setFont(verdana11); + fontNameCB.setBounds(new Rectangle(172, 111, 147, 21)); + gapSymbolCB.setFont(verdana11); + gapSymbolCB.setBounds(new Rectangle(172, 204, 69, 21)); + startupCheckbox.setText("Open file"); startupCheckbox.setFont(verdana11); - startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT); - startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT); - startupCheckbox.setSelected(true); - startupFileTextfield.setFont(verdana11); - startupFileTextfield.setBounds(new Rectangle(172, 273, 270, 20)); - startupFileTextfield.addMouseListener(new MouseAdapter() - { - public void mouseClicked(MouseEvent e) - { - if (e.getClickCount() > 1) - { - startupFileTextfield_mouseClicked(); - } - } - }); + startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT); + startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT); + startupCheckbox.setSelected(true); + startupFileTextfield.setFont(verdana11); + startupFileTextfield.setBounds(new Rectangle(172, 273, 270, 20)); + startupFileTextfield.addMouseListener(new MouseAdapter() + { + public void mouseClicked(MouseEvent e) + { + if (e.getClickCount() > 1) + { + startupFileTextfield_mouseClicked(); + } + } + }); - connectTab.setLayout(gridBagLayout3); + connectTab.setLayout(gridBagLayout3); serverLabel.setText("Address"); serverLabel.setHorizontalAlignment(SwingConstants.RIGHT); serverLabel.setFont(verdana11); @@ -242,41 +241,47 @@ public class GPreferences extends JPanel defaultBrowser.setFont(verdana11); defaultBrowser.setText(""); newLink.setText("New"); - newLink.addActionListener(new java.awt.event.ActionListener() { - public void actionPerformed(ActionEvent e) { + newLink.addActionListener(new java.awt.event.ActionListener() + { + public void actionPerformed(ActionEvent e) + { newLink_actionPerformed(e); } }); editLink.setText("Edit"); - editLink.addActionListener(new java.awt.event.ActionListener() { - public void actionPerformed(ActionEvent e) { + editLink.addActionListener(new java.awt.event.ActionListener() + { + public void actionPerformed(ActionEvent e) + { editLink_actionPerformed(e); } }); deleteLink.setText("Delete"); - deleteLink.addActionListener(new java.awt.event.ActionListener() { - public void actionPerformed(ActionEvent e) { + deleteLink.addActionListener(new java.awt.event.ActionListener() + { + public void actionPerformed(ActionEvent e) + { deleteLink_actionPerformed(e); } }); linkURLList.addListSelectionListener(new ListSelectionListener() - { - public void valueChanged(ListSelectionEvent e) - { - int index = linkURLList.getSelectedIndex(); - linkNameList.setSelectedIndex(index); - } - }); + { + public void valueChanged(ListSelectionEvent e) + { + int index = linkURLList.getSelectedIndex(); + linkNameList.setSelectedIndex(index); + } + }); linkNameList.addListSelectionListener(new ListSelectionListener() - { - public void valueChanged(ListSelectionEvent e) - { - int index = linkNameList.getSelectedIndex(); - linkURLList.setSelectedIndex(index); - } - }); + { + public void valueChanged(ListSelectionEvent e) + { + int index = linkNameList.getSelectedIndex(); + linkURLList.setSelectedIndex(index); + } + }); linkScrollPane.setBorder(null); linkPanel.setBorder(new TitledBorder("URL link from Sequence ID")); @@ -294,9 +299,9 @@ public class GPreferences extends JPanel public void mouseClicked(MouseEvent e) { if (e.getClickCount() > 1) - { - defaultBrowser_mouseClicked(e); - } + { + defaultBrowser_mouseClicked(e); + } } }); useProxy.setFont(verdana11); @@ -390,6 +395,12 @@ public class GPreferences extends JPanel idItalics.setHorizontalAlignment(SwingConstants.RIGHT); idItalics.setHorizontalTextPosition(SwingConstants.LEADING); idItalics.setText("Sequence Name Italics"); + openoverv.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11)); + openoverv.setActionCommand("Open Overview"); + openoverv.setHorizontalAlignment(SwingConstants.RIGHT); + openoverv.setHorizontalTextPosition(SwingConstants.LEADING); + openoverv.setText("Open Overview Window"); + openoverv.setBounds(new Rectangle(169, 17, 152, 23)); jPanel2.add(fullScreen); jPanel2.add(annotations); jPanel2.add(seqLimit); @@ -402,6 +413,7 @@ public class GPreferences extends JPanel jPanel2.add(colourLabel); jPanel2.add(sortLabel); jPanel2.add(startupCheckbox); + visualTab.add(openoverv); visualTab.add(startupFileTextfield); visualTab.add(sortby); visualTab.add(colour); @@ -422,11 +434,11 @@ public class GPreferences extends JPanel linkScrollPane.getViewport().add(linkPanel2, null); linkPanel2.add(linkURLList, BorderLayout.CENTER); linkPanel2.add(linkNameList, BorderLayout.WEST); - okCancelPanel.add(ok); - okCancelPanel.add(cancel); + okCancelPanel.add(ok); + okCancelPanel.add(cancel); this.add(tabbedPane, java.awt.BorderLayout.CENTER); - this.add(okCancelPanel, java.awt.BorderLayout.SOUTH); + this.add(okCancelPanel, java.awt.BorderLayout.SOUTH); jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0 , GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0, 2, 4, 0), 5, 0)); @@ -453,18 +465,17 @@ public class GPreferences extends JPanel , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL, new Insets(15, 0, 0, 15), 307, 1)); - jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0 , GridBagConstraints.WEST, GridBagConstraints.NONE, new Insets(0, 2, 5, 185), 2, -4)); DefaultListCellRenderer dlcr = new DefaultListCellRenderer(); - dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER); - gapSymbolCB.setRenderer(dlcr); + dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER); + gapSymbolCB.setRenderer(dlcr); tabbedPane.add(visualTab, "Visual"); - tabbedPane.add(connectTab,"Connections"); + tabbedPane.add(connectTab, "Connections"); tabbedPane.add(exportTab, "Output"); jPanel11.add(jLabel1); jPanel11.add(blcjv); @@ -485,51 +496,52 @@ public class GPreferences extends JPanel exportTab.add(jPanel11); } - /** - * DOCUMENT ME! - * - * @param e DOCUMENT ME! - */ - public void ok_actionPerformed(ActionEvent e) - { - } - - /** - * DOCUMENT ME! - * - * @param e DOCUMENT ME! - */ - public void cancel_actionPerformed(ActionEvent e) - { - } - - /** - * DOCUMENT ME! - * - * @param e DOCUMENT ME! - */ - public void annotations_actionPerformed(ActionEvent e) - { - } + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void ok_actionPerformed(ActionEvent e) + { + } + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void cancel_actionPerformed(ActionEvent e) + { + } - /** - * DOCUMENT ME! - */ - public void startupFileTextfield_mouseClicked() - { - } + /** + * DOCUMENT ME! + * + * @param e DOCUMENT ME! + */ + public void annotations_actionPerformed(ActionEvent e) + { + } + /** + * DOCUMENT ME! + */ + public void startupFileTextfield_mouseClicked() + { + } - public void newLink_actionPerformed(ActionEvent e) { + public void newLink_actionPerformed(ActionEvent e) + { } - public void editLink_actionPerformed(ActionEvent e) { + public void editLink_actionPerformed(ActionEvent e) + { } - public void deleteLink_actionPerformed(ActionEvent e) { + public void deleteLink_actionPerformed(ActionEvent e) + { } @@ -545,8 +557,8 @@ public class GPreferences extends JPanel public void useProxy_actionPerformed() { - proxyServerTB.setEnabled(useProxy.isSelected()); - proxyPortTB.setEnabled(useProxy.isSelected()); + proxyServerTB.setEnabled(useProxy.isSelected()); + proxyPortTB.setEnabled(useProxy.isSelected()); } }