X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGStructureChooser.java;h=9bcaa5aa1be2ed7a3839e3b25411e26e35d9a37b;hb=d7e95f458ebcbbdcc13f8b07357542ab2d7e4547;hp=080fce9b8873698002479fcbd58c6b58cba21b1a;hpb=a17368a2ea84c23fc5e65b8ea3c08086926758e4;p=jalview.git diff --git a/src/jalview/jbgui/GStructureChooser.java b/src/jalview/jbgui/GStructureChooser.java index 080fce9..9bcaa5a 100644 --- a/src/jalview/jbgui/GStructureChooser.java +++ b/src/jalview/jbgui/GStructureChooser.java @@ -22,17 +22,31 @@ package jalview.jbgui; import jalview.datamodel.SequenceI; +import jalview.fts.api.FTSDataColumnI; +import jalview.fts.core.FTSDataColumnPreferences; +import jalview.fts.core.FTSDataColumnPreferences.PreferenceSource; +import jalview.fts.service.pdb.PDBFTSRestClient; import jalview.gui.AlignmentPanel; import jalview.gui.Desktop; +import jalview.gui.JvSwingUtils; import jalview.util.MessageManager; import java.awt.BorderLayout; import java.awt.CardLayout; +import java.awt.Component; import java.awt.Dimension; import java.awt.FlowLayout; +import java.awt.GridLayout; import java.awt.event.ActionEvent; import java.awt.event.ItemEvent; import java.awt.event.ItemListener; +import java.awt.event.KeyAdapter; +import java.awt.event.KeyEvent; +import java.awt.event.MouseAdapter; +import java.awt.event.MouseEvent; +import java.util.Arrays; +import java.util.HashMap; +import java.util.Map; import javax.swing.ImageIcon; import javax.swing.JButton; @@ -41,32 +55,48 @@ import javax.swing.JComboBox; import javax.swing.JFrame; import javax.swing.JInternalFrame; import javax.swing.JLabel; +import javax.swing.JList; import javax.swing.JPanel; import javax.swing.JScrollPane; +import javax.swing.JSeparator; +import javax.swing.JTabbedPane; import javax.swing.JTable; import javax.swing.JTextField; +import javax.swing.ListCellRenderer; +import javax.swing.event.ChangeEvent; +import javax.swing.event.ChangeListener; import javax.swing.event.DocumentEvent; import javax.swing.event.DocumentListener; +import javax.swing.event.InternalFrameEvent; +import javax.swing.table.TableColumn; @SuppressWarnings("serial") /** - * GUI layout for structure chooser + * GUI layout for structure chooser + * * @author tcnofoegbu * */ -public abstract class GStructureChooser extends JPanel implements - ItemListener +public abstract class GStructureChooser extends JPanel + implements ItemListener { + protected JPanel statusPanel = new JPanel(); + + public JLabel statusBar = new JLabel(); + + private JPanel pnl_actionsAndStatus = new JPanel(new BorderLayout()); + protected String frameTitle = MessageManager .getString("label.structure_chooser"); protected JInternalFrame mainFrame = new JInternalFrame(frameTitle); - protected JComboBox cmb_filterOption = new JComboBox(); - + protected JComboBox cmb_filterOption = new JComboBox<>(); protected AlignmentPanel ap; + protected StringBuilder errorWarning = new StringBuilder(); + protected JLabel lbl_result = new JLabel( MessageManager.getString("label.select")); @@ -80,7 +110,7 @@ public abstract class GStructureChooser extends JPanel implements private JPanel pnl_actions = new JPanel(); - private JPanel pnl_filter = new JPanel(); + private JPanel pnl_main = new JPanel(); private JPanel pnl_idInput = new JPanel(new FlowLayout()); @@ -90,6 +120,8 @@ public abstract class GStructureChooser extends JPanel implements private JPanel pnl_fileChooserBL = new JPanel(new BorderLayout()); + private JPanel pnl_locPDB = new JPanel(new BorderLayout()); + protected JPanel pnl_switchableViews = new JPanel(new CardLayout()); protected CardLayout layout_switchableViews = (CardLayout) (pnl_switchableViews @@ -103,14 +135,19 @@ public abstract class GStructureChooser extends JPanel implements protected JCheckBox chk_invertFilter = new JCheckBox( MessageManager.getString("label.invert")); - protected ImageIcon loadingImage = new ImageIcon(getClass().getResource( - "/images/loading.gif")); + protected ImageIcon loadingImage = new ImageIcon( + getClass().getResource("/images/loading.gif")); + + protected ImageIcon goodImage = new ImageIcon( + getClass().getResource("/images/good.png")); + + protected ImageIcon errorImage = new ImageIcon( + getClass().getResource("/images/error.png")); - protected ImageIcon goodImage = new ImageIcon(getClass().getResource( - "/images/good.png")); + protected ImageIcon warningImage = new ImageIcon( + getClass().getResource("/images/warning.gif")); - protected ImageIcon errorImage = new ImageIcon(getClass().getResource( - "/images/error.png")); + protected JLabel lbl_warning = new JLabel(warningImage); protected JLabel lbl_loading = new JLabel(loadingImage); @@ -128,13 +165,104 @@ public abstract class GStructureChooser extends JPanel implements protected static final String VIEWS_ENTER_ID = "VIEWS_ENTER_ID"; - // protected JList jList_FoundStructures = new - // JList(); + /** + * 'cached' structure view + */ + protected static final String VIEWS_LOCAL_PDB = "VIEWS_LOCAL_PDB"; + + protected JTable tbl_local_pdb = new JTable(); + + protected JScrollPane scrl_localPDB = new JScrollPane(tbl_local_pdb); + + protected JTabbedPane pnl_filter = new JTabbedPane(); + + protected FTSDataColumnPreferences pdbDocFieldPrefs = new FTSDataColumnPreferences( + PreferenceSource.STRUCTURE_CHOOSER, + PDBFTSRestClient.getInstance()); + + protected FTSDataColumnI[] previousWantedFields; + + protected static Map tempUserPrefs = new HashMap<>(); + + private JTable tbl_summary = new JTable() + { + private boolean inLayout; + + @Override + public boolean getScrollableTracksViewportWidth() + { + return hasExcessWidth(); + + } - protected JTable tbl_summary = new JTable(); + @Override + public void doLayout() + { + if (hasExcessWidth()) + { + autoResizeMode = AUTO_RESIZE_SUBSEQUENT_COLUMNS; + } + inLayout = true; + super.doLayout(); + inLayout = false; + autoResizeMode = AUTO_RESIZE_OFF; + } + + protected boolean hasExcessWidth() + { + return getPreferredSize().width < getParent().getWidth(); + } + + @Override + public void columnMarginChanged(ChangeEvent e) + { + if (isEditing()) + { + removeEditor(); + } + TableColumn resizingColumn = getTableHeader().getResizingColumn(); + // Need to do this here, before the parent's + // layout manager calls getPreferredSize(). + if (resizingColumn != null && autoResizeMode == AUTO_RESIZE_OFF + && !inLayout) + { + resizingColumn.setPreferredWidth(resizingColumn.getWidth()); + String colHeader = resizingColumn.getHeaderValue().toString(); + tempUserPrefs.put(colHeader, resizingColumn.getWidth()); + } + resizeAndRepaint(); + } + + @Override + public String getToolTipText(MouseEvent evt) + { + String toolTipText = null; + java.awt.Point pnt = evt.getPoint(); + int rowIndex = rowAtPoint(pnt); + int colIndex = columnAtPoint(pnt); + + try + { + if (getValueAt(rowIndex, colIndex) == null) + { + return null; + } + toolTipText = getValueAt(rowIndex, colIndex).toString(); + } catch (Exception e) + { + // e.printStackTrace(); + } + toolTipText = (toolTipText == null ? null + : (toolTipText.length() > 500 + ? JvSwingUtils.wrapTooltip(true, + "\"" + toolTipText.subSequence(0, 500) + + "...\"") + : JvSwingUtils.wrapTooltip(true, toolTipText))); + return toolTipText; + } + }; - protected JScrollPane scrl_foundStructures = new JScrollPane( - tbl_summary); + protected JScrollPane scrl_foundStructures = new JScrollPane(tbl_summary); public GStructureChooser() { @@ -157,22 +285,158 @@ public abstract class GStructureChooser extends JPanel implements */ private void jbInit() throws Exception { + Integer width = tempUserPrefs.get("structureChooser.width") == null + ? 800 + : tempUserPrefs.get("structureChooser.width"); + Integer height = tempUserPrefs.get("structureChooser.height") == null + ? 400 + : tempUserPrefs.get("structureChooser.height"); + tbl_summary.setAutoCreateRowSorter(true); + tbl_summary.getTableHeader().setReorderingAllowed(false); + tbl_summary.addMouseListener(new MouseAdapter() + { + @Override + public void mouseClicked(MouseEvent e) + { + validateSelections(); + } + + @Override + public void mouseReleased(MouseEvent e) + { + validateSelections(); + } + }); + tbl_summary.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + validateSelections(); + switch (evt.getKeyCode()) + { + case KeyEvent.VK_ESCAPE: // escape key + mainFrame.dispose(); + break; + case KeyEvent.VK_ENTER: // enter key + if (btn_view.isEnabled()) + { + ok_ActionPerformed(); + } + break; + case KeyEvent.VK_TAB: // tab key + if (evt.isShiftDown()) + { + pnl_filter.requestFocus(); + } + else + { + btn_view.requestFocus(); + } + evt.consume(); + break; + default: + return; + } + } + }); + tbl_local_pdb.setAutoCreateRowSorter(true); + tbl_local_pdb.getTableHeader().setReorderingAllowed(false); + tbl_local_pdb.addMouseListener(new MouseAdapter() + { + @Override + public void mouseClicked(MouseEvent e) + { + validateSelections(); + } + + @Override + public void mouseReleased(MouseEvent e) + { + validateSelections(); + } + }); + tbl_local_pdb.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + validateSelections(); + switch (evt.getKeyCode()) + { + case KeyEvent.VK_ESCAPE: // escape key + mainFrame.dispose(); + break; + case KeyEvent.VK_ENTER: // enter key + if (btn_view.isEnabled()) + { + ok_ActionPerformed(); + } + break; + case KeyEvent.VK_TAB: // tab key + if (evt.isShiftDown()) + { + cmb_filterOption.requestFocus(); + } + else + { + if (btn_view.isEnabled()) + { + btn_view.requestFocus(); + } + else + { + btn_cancel.requestFocus(); + } + } + evt.consume(); + break; + default: + return; + } + } + }); btn_view.setFont(new java.awt.Font("Verdana", 0, 12)); btn_view.setText(MessageManager.getString("action.view")); btn_view.addActionListener(new java.awt.event.ActionListener() { + @Override public void actionPerformed(ActionEvent e) { ok_ActionPerformed(); } }); + btn_view.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + if (evt.getKeyCode() == KeyEvent.VK_ENTER) + { + ok_ActionPerformed(); + } + } + }); + btn_cancel.setFont(new java.awt.Font("Verdana", 0, 12)); btn_cancel.setText(MessageManager.getString("action.cancel")); btn_cancel.addActionListener(new java.awt.event.ActionListener() { + @Override public void actionPerformed(ActionEvent e) { - mainFrame.dispose(); + closeAction(pnl_filter.getHeight()); + } + }); + btn_cancel.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + if (evt.getKeyCode() == KeyEvent.VK_ENTER) + { + closeAction(pnl_filter.getHeight()); + } } }); @@ -181,37 +445,38 @@ public abstract class GStructureChooser extends JPanel implements btn_pdbFromFile.setText(btn_title + " "); btn_pdbFromFile.addActionListener(new java.awt.event.ActionListener() { + @Override public void actionPerformed(ActionEvent e) { pdbFromFile_actionPerformed(); } }); + btn_pdbFromFile.addKeyListener(new KeyAdapter() + { + @Override + public void keyPressed(KeyEvent evt) + { + if (evt.getKeyCode() == KeyEvent.VK_ENTER) + { + pdbFromFile_actionPerformed(); + } + } + }); + + scrl_foundStructures.setPreferredSize(new Dimension(width, height)); - scrl_foundStructures.setPreferredSize(new Dimension(500, 300)); - scrl_foundStructures - .setHorizontalScrollBarPolicy(JScrollPane.HORIZONTAL_SCROLLBAR_NEVER); + scrl_localPDB.setPreferredSize(new Dimension(width, height)); + scrl_localPDB.setHorizontalScrollBarPolicy( + JScrollPane.HORIZONTAL_SCROLLBAR_NEVER); cmb_filterOption.setFont(new java.awt.Font("Verdana", 0, 12)); chk_invertFilter.setFont(new java.awt.Font("Verdana", 0, 12)); chk_rememberSettings.setFont(new java.awt.Font("Verdana", 0, 12)); - - cmb_filterOption.addItemListener(this); - chk_invertFilter.addItemListener(this); - - pnl_actions.add(chk_rememberSettings); - pnl_actions.add(btn_view); - pnl_actions.add(btn_cancel); - - // pnl_filter.add(lbl_result); - pnl_filter.add(cmb_filterOption); - pnl_filter.add(lbl_loading); - pnl_filter.add(chk_invertFilter); - lbl_loading.setVisible(false); - - txt_search.setToolTipText(MessageManager - .getString("label.enter_pdb_id")); - cmb_filterOption.setToolTipText(MessageManager - .getString("info.select_filter_option")); + chk_rememberSettings.setVisible(false); + txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true, + MessageManager.getString("label.enter_pdb_id_tip"))); + cmb_filterOption.setToolTipText( + MessageManager.getString("info.select_filter_option")); txt_search.getDocument().addDocumentListener(new DocumentListener() { @Override @@ -232,34 +497,153 @@ public abstract class GStructureChooser extends JPanel implements txt_search_ActionPerformed(); } }); - pnl_idInput.add(txt_search); - pnl_idInput.add(lbl_pdbManualFetchStatus); + + cmb_filterOption.addItemListener(this); + + // add CustomComboSeparatorsRenderer to filter option combo-box + cmb_filterOption.setRenderer(new CustomComboSeparatorsRenderer( + (ListCellRenderer) cmb_filterOption.getRenderer()) + { + @Override + protected boolean addSeparatorAfter(JList list, FilterOption value, + int index) + { + return value.isAddSeparatorAfter(); + } + }); + + chk_invertFilter.addItemListener(this); + + pnl_actions.add(chk_rememberSettings); + pnl_actions.add(btn_view); + pnl_actions.add(btn_cancel); + + // pnl_filter.add(lbl_result); + pnl_main.add(cmb_filterOption); + pnl_main.add(lbl_loading); + pnl_main.add(chk_invertFilter); + lbl_loading.setVisible(false); pnl_fileChooser.add(btn_pdbFromFile); pnl_fileChooser.add(lbl_fromFileStatus); - pnl_fileChooserBL.add(fileChooserAssSeqPanel, BorderLayout.NORTH); pnl_fileChooserBL.add(pnl_fileChooser, BorderLayout.CENTER); + pnl_idInput.add(txt_search); + pnl_idInput.add(lbl_pdbManualFetchStatus); pnl_idInputBL.add(idInputAssSeqPanel, BorderLayout.NORTH); pnl_idInputBL.add(pnl_idInput, BorderLayout.CENTER); + final String foundStructureSummary = MessageManager + .getString("label.found_structures_summary"); + final String configureCols = MessageManager + .getString("label.configure_displayed_columns"); + ChangeListener changeListener = new ChangeListener() + { + @Override + public void stateChanged(ChangeEvent changeEvent) + { + JTabbedPane sourceTabbedPane = (JTabbedPane) changeEvent + .getSource(); + int index = sourceTabbedPane.getSelectedIndex(); + btn_view.setVisible(true); + btn_cancel.setVisible(true); + if (sourceTabbedPane.getTitleAt(index).equals(configureCols)) + { + btn_view.setEnabled(false); + btn_cancel.setEnabled(false); + btn_view.setVisible(false); + btn_cancel.setVisible(false); + previousWantedFields = pdbDocFieldPrefs + .getStructureSummaryFields() + .toArray(new FTSDataColumnI[0]); + } + if (sourceTabbedPane.getTitleAt(index) + .equals(foundStructureSummary)) + { + btn_cancel.setEnabled(true); + if (wantedFieldsUpdated()) + { + tabRefresh(); + } + else + { + validateSelections(); + } + } + } + }; + pnl_filter.addChangeListener(changeListener); + pnl_filter.setPreferredSize(new Dimension(width, height)); + pnl_filter.add(foundStructureSummary, scrl_foundStructures); + pnl_filter.add(configureCols, pdbDocFieldPrefs); + + pnl_locPDB.add(scrl_localPDB); + pnl_switchableViews.add(pnl_fileChooserBL, VIEWS_FROM_FILE); pnl_switchableViews.add(pnl_idInputBL, VIEWS_ENTER_ID); - pnl_switchableViews.add(scrl_foundStructures, VIEWS_FILTER); - + pnl_switchableViews.add(pnl_filter, VIEWS_FILTER); + pnl_switchableViews.add(pnl_locPDB, VIEWS_LOCAL_PDB); + this.setLayout(mainLayout); - this.add(pnl_filter, java.awt.BorderLayout.NORTH); + this.add(pnl_main, java.awt.BorderLayout.NORTH); this.add(pnl_switchableViews, java.awt.BorderLayout.CENTER); - this.add(pnl_actions, java.awt.BorderLayout.SOUTH); - + // this.add(pnl_actions, java.awt.BorderLayout.SOUTH); + statusPanel.setLayout(new GridLayout()); + pnl_actionsAndStatus.add(pnl_actions, BorderLayout.CENTER); + pnl_actionsAndStatus.add(statusPanel, BorderLayout.SOUTH); + statusPanel.add(statusBar, null); + this.add(pnl_actionsAndStatus, java.awt.BorderLayout.SOUTH); + + mainFrame.addInternalFrameListener( + new javax.swing.event.InternalFrameAdapter() + { + @Override + public void internalFrameClosing(InternalFrameEvent e) + { + closeAction(pnl_filter.getHeight()); + } + }); mainFrame.setVisible(true); mainFrame.setContentPane(this); mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE); - Desktop.addInternalFrame(mainFrame, frameTitle, 800, 400); + Integer x = tempUserPrefs.get("structureChooser.x"); + Integer y = tempUserPrefs.get("structureChooser.y"); + if (x != null && y != null) + { + mainFrame.setLocation(x, y); + } + Desktop.addInternalFrame(mainFrame, frameTitle, width, height); + } + + protected void closeAction(int preferredHeight) + { + // System.out.println(">>>>>>>>>> closing internal frame!!!"); + // System.out.println("width : " + mainFrame.getWidth()); + // System.out.println("heigh : " + mainFrame.getHeight()); + // System.out.println("x : " + mainFrame.getX()); + // System.out.println("y : " + mainFrame.getY()); + tempUserPrefs.put("structureChooser.width", pnl_filter.getWidth()); + tempUserPrefs.put("structureChooser.height", preferredHeight); + tempUserPrefs.put("structureChooser.x", mainFrame.getX()); + tempUserPrefs.put("structureChooser.y", mainFrame.getY()); + mainFrame.dispose(); + } + + public boolean wantedFieldsUpdated() + { + if (previousWantedFields == null) + { + return true; + } + + FTSDataColumnI[] currentWantedFields = pdbDocFieldPrefs + .getStructureSummaryFields().toArray(new FTSDataColumnI[0]); + return Arrays.equals(currentWantedFields, previousWantedFields) ? false + : true; + } - @Override /** * Event listener for the 'filter' combo-box and 'invert' check-box @@ -283,11 +667,28 @@ public abstract class GStructureChooser extends JPanel implements private String view; - public FilterOption(String name, String value, String view) + private boolean addSeparatorAfter; + + /** + * Model for structure filter option + * + * @param name + * - the name of the Option + * @param value + * - the value of the option + * @param view + * - the category of the filter option + * @param addSeparatorAfter + * - if true, a horizontal separator is rendered immediately after + * this filter option, otherwise + */ + public FilterOption(String name, String value, String view, + boolean addSeparatorAfter) { this.name = name; this.value = value; this.view = view; + this.addSeparatorAfter = addSeparatorAfter; } public String getName() @@ -320,10 +721,21 @@ public abstract class GStructureChooser extends JPanel implements this.view = view; } + @Override public String toString() { return this.name; } + + public boolean isAddSeparatorAfter() + { + return addSeparatorAfter; + } + + public void setAddSeparatorAfter(boolean addSeparatorAfter) + { + this.addSeparatorAfter = addSeparatorAfter; + } } /** @@ -336,13 +748,15 @@ public abstract class GStructureChooser extends JPanel implements public class AssociateSeqOptions { private SequenceI sequence; + private String name; public AssociateSeqOptions(SequenceI seq) { this.sequence = seq; - this.name = (seq.getName().length() >= 23) ? seq.getName().substring( - 0, 23) : seq.getName(); + this.name = (seq.getName().length() >= 23) + ? seq.getName().substring(0, 23) + : seq.getName(); } public AssociateSeqOptions(String name, SequenceI seq) @@ -351,6 +765,7 @@ public abstract class GStructureChooser extends JPanel implements this.sequence = seq; } + @Override public String toString() { return name; @@ -388,19 +803,23 @@ public abstract class GStructureChooser extends JPanel implements */ public class AssciateSeqPanel extends JPanel implements ItemListener { - private JComboBox cmb_assSeq = new JComboBox(); + private JComboBox cmb_assSeq = new JComboBox<>(); + + private JLabel lbl_associateSeq = new JLabel(); + public AssciateSeqPanel() { this.setLayout(new FlowLayout()); this.add(cmb_assSeq); - cmb_assSeq.setToolTipText(MessageManager - .getString("info.associate_wit_sequence")); + this.add(lbl_associateSeq); + cmb_assSeq.setToolTipText( + MessageManager.getString("info.associate_wit_sequence")); cmb_assSeq.addItemListener(this); } public void loadCmbAssSeq() { - populateCmbAssociateSeqOptions(cmb_assSeq); + populateCmbAssociateSeqOptions(cmb_assSeq, lbl_associateSeq); } public JComboBox getCmb_assSeq() @@ -423,16 +842,64 @@ public abstract class GStructureChooser extends JPanel implements } } + public JTable getResultTable() + { + return tbl_summary; + } + public JComboBox getCmbFilterOption() { return cmb_filterOption; } - protected abstract void stateChanged(ItemEvent e); + /** + * Custom ListCellRenderer for adding a separator between different categories + * of structure chooser filter option drop-down. + * + * @author tcnofoegbu + * + */ + public abstract class CustomComboSeparatorsRenderer + implements ListCellRenderer + { + private ListCellRenderer regent; + + private JPanel separatorPanel = new JPanel(new BorderLayout()); - protected abstract void updateCurrentView(); + private JSeparator jSeparator = new JSeparator(); - protected abstract void populateFilterComboBox(); + public CustomComboSeparatorsRenderer( + ListCellRenderer listCellRenderer) + { + this.regent = listCellRenderer; + } + + @Override + public Component getListCellRendererComponent(JList list, Object value, + int index, boolean isSelected, boolean cellHasFocus) + { + + Component comp = regent.getListCellRendererComponent(list, value, + index, isSelected, cellHasFocus); + if (index != -1 + && addSeparatorAfter(list, (FilterOption) value, index)) + { + separatorPanel.removeAll(); + separatorPanel.add(comp, BorderLayout.CENTER); + separatorPanel.add(jSeparator, BorderLayout.SOUTH); + return separatorPanel; + } + else + { + return comp; + } + } + + protected abstract boolean addSeparatorAfter(JList list, + FilterOption value, int index); + } + + protected abstract void stateChanged(ItemEvent e); protected abstract void ok_ActionPerformed(); @@ -441,7 +908,12 @@ public abstract class GStructureChooser extends JPanel implements protected abstract void txt_search_ActionPerformed(); public abstract void populateCmbAssociateSeqOptions( - JComboBox cmb_assSeq); + JComboBox cmb_assSeq, + JLabel lbl_associateSeq); public abstract void cmbAssSeqStateChanged(); -} + + public abstract void tabRefresh(); + + public abstract void validateSelections(); +} \ No newline at end of file