X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGStructureViewer.java;h=10e0b9bd98cedda35ff6da000fb4b6e1fd0f1a21;hb=418cee6e0cd56c6bdc9d7f5fc7c020d4eb94ffc8;hp=d60e5fad47716cc2b11c2267b68e57c1e336f29b;hpb=ea1bc94cb0d4ea4b877101cb7d93283ed4a199fe;p=jalview.git

diff --git a/src/jalview/jbgui/GStructureViewer.java b/src/jalview/jbgui/GStructureViewer.java
index d60e5fa..10e0b9b 100644
--- a/src/jalview/jbgui/GStructureViewer.java
+++ b/src/jalview/jbgui/GStructureViewer.java
@@ -78,14 +78,136 @@ public class GStructureViewer  extends JInternalFrame
     });
     viewMenu.setText("View");
     chainMenu.setText("Show Chain");
+    colourMenu.setText("Colours");
+    backGround.setText("Background Colour...");
+    backGround.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        backGround_actionPerformed(actionEvent);
+      }
+    });
+    seqColour.setSelected(true);
+    seqColour.setText("By Sequence");
+    seqColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        seqColour_actionPerformed(actionEvent);
+      }
+    });
+    chainColour.setText("By Chain");
+    chainColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        chainColour_actionPerformed(actionEvent);
+      }
+    });
+    chargeColour.setText("Charge & Cysteine");
+    chargeColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        chargeColour_actionPerformed(actionEvent);
+      }
+    });
+    zappoColour.setText("Zappo");
+    zappoColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        zappoColour_actionPerformed(actionEvent);
+      }
+    });
+    taylorColour.setText("Taylor");
+    taylorColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        taylorColour_actionPerformed(actionEvent);
+      }
+    });
+    hydroColour.setText("Hydro");
+    hydroColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        hydroColour_actionPerformed(actionEvent);
+      }
+    });
+    strandColour.setText("Strand");
+    strandColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        strandColour_actionPerformed(actionEvent);
+      }
+    });
+    helixColour.setText("Helix Propensity");
+    helixColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        helixColour_actionPerformed(actionEvent);
+      }
+    });
+    turnColour.setText("Turn Propensity");
+    turnColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        turnColour_actionPerformed(actionEvent);
+      }
+    });
+    buriedColour.setText("Buried Index");
+    buriedColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        buriedColour_actionPerformed(actionEvent);
+      }
+    });
+    userColour.setText("User Defined ...");
+    userColour.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        userColour_actionPerformed(actionEvent);
+      }
+    });
+    helpMenu.setText("Help");
+    jmolHelp.setText("Jmol Help");
+    jmolHelp.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent actionEvent)
+      {
+        jmolHelp_actionPerformed(actionEvent);
+      }
+    });
     menuBar.add(fileMenu);
     menuBar.add(viewMenu);
+    menuBar.add(colourMenu);
+    menuBar.add(helpMenu);
     fileMenu.add(savemenu);
     fileMenu.add(viewMapping);
     savemenu.add(pdbFile);
     savemenu.add(png);
     savemenu.add(eps);
     viewMenu.add(chainMenu);
+    colourMenu.add(seqColour);
+    colourMenu.add(chainColour);
+    colourMenu.add(chargeColour);
+    colourMenu.add(zappoColour);
+    colourMenu.add(taylorColour);
+    colourMenu.add(hydroColour);
+    colourMenu.add(helixColour);
+    colourMenu.add(strandColour);
+    colourMenu.add(turnColour);
+    colourMenu.add(buriedColour);
+    colourMenu.add(userColour);
+    colourMenu.add(backGround);
+    helpMenu.add(jmolHelp);
   }
 
   JMenuBar menuBar = new JMenuBar();
@@ -98,6 +220,21 @@ public class GStructureViewer  extends JInternalFrame
   JMenu viewMenu = new JMenu();
   protected JMenu chainMenu = new JMenu();
   JMenu jMenu1 = new JMenu();
+  JMenu colourMenu = new JMenu();
+  JMenuItem backGround = new JMenuItem();
+  protected JCheckBoxMenuItem seqColour = new JCheckBoxMenuItem();
+  JMenuItem chainColour = new JMenuItem();
+  JMenuItem chargeColour = new JMenuItem();
+  JMenuItem zappoColour = new JMenuItem();
+  JMenuItem taylorColour = new JMenuItem();
+  JMenuItem hydroColour = new JMenuItem();
+  JMenuItem strandColour = new JMenuItem();
+  JMenuItem helixColour = new JMenuItem();
+  JMenuItem turnColour = new JMenuItem();
+  JMenuItem buriedColour = new JMenuItem();
+  JMenuItem userColour = new JMenuItem();
+  JMenu helpMenu = new JMenu();
+  JMenuItem jmolHelp = new JMenuItem();
   public void pdbFile_actionPerformed(ActionEvent actionEvent)
   {
 
@@ -117,4 +254,69 @@ public class GStructureViewer  extends JInternalFrame
   {
 
   }
+
+  public void seqColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void chainColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void chargeColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void zappoColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void taylorColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void hydroColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void helixColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void strandColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void turnColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void buriedColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void userColour_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void backGround_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
+
+  public void jmolHelp_actionPerformed(ActionEvent actionEvent)
+  {
+
+  }
 }