X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGStructureViewer.java;h=6c0bedae34587b6529a1e234682725f7d88cd833;hb=4f30214e8098748469c6a4269ac2ed6c5750e4b0;hp=f7fa6db1b1c52e3cc5b7a071248ca71a5b21fa92;hpb=0061941739d032ad91aed23bda07e2ad543c2ccb;p=jalview.git diff --git a/src/jalview/jbgui/GStructureViewer.java b/src/jalview/jbgui/GStructureViewer.java index f7fa6db..6c0beda 100644 --- a/src/jalview/jbgui/GStructureViewer.java +++ b/src/jalview/jbgui/GStructureViewer.java @@ -1,28 +1,80 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.jbgui; -import javax.swing.*; -import java.awt.event.ActionListener; +import java.awt.BorderLayout; +import java.awt.GridLayout; import java.awt.event.ActionEvent; +import java.awt.event.ActionListener; -public class GStructureViewer extends JInternalFrame +import javax.swing.JInternalFrame; +import javax.swing.JLabel; +import javax.swing.JMenu; +import javax.swing.JMenuBar; +import javax.swing.JMenuItem; +import javax.swing.JPanel; +import javax.swing.JRadioButtonMenuItem; + +import jalview.api.structures.JalviewStructureDisplayI; +import jalview.gui.ColourMenuHelper.ColourChangeListener; +import jalview.util.ImageMaker.TYPE; +import jalview.util.MessageManager; + +@SuppressWarnings("serial") +public abstract class GStructureViewer extends JInternalFrame + implements JalviewStructureDisplayI, ColourChangeListener { + // private AAStructureBindingModel bindingModel; + + protected JMenu savemenu; + + protected JMenu viewMenu; + + protected JMenu colourMenu; + + protected JMenu chainMenu; + + protected JMenu viewerActionMenu; + + protected JMenuItem alignStructs; + + protected JMenuItem fitToWindow; + + protected JRadioButtonMenuItem seqColour; + + protected JRadioButtonMenuItem chainColour; + + protected JRadioButtonMenuItem chargeColour; + + protected JRadioButtonMenuItem viewerColour; + + protected JMenuItem helpItem; + + protected JLabel statusBar; + + protected JPanel statusPanel; + + /** + * Constructor + */ public GStructureViewer() { try @@ -36,323 +88,181 @@ public class GStructureViewer extends JInternalFrame private void jbInit() throws Exception { + + setName("jalview-structureviewer"); + + JMenuBar menuBar = new JMenuBar(); this.setJMenuBar(menuBar); - fileMenu.setText("File"); - savemenu.setActionCommand("Save Image"); - savemenu.setText("Save As"); - pdbFile.setText("PDB File"); + + JMenu fileMenu = new JMenu(); + fileMenu.setText(MessageManager.getString("action.file")); + + savemenu = new JMenu(); + savemenu.setActionCommand( + MessageManager.getString("action.save_image")); + savemenu.setText(MessageManager.getString("action.save_as")); + + JMenuItem pdbFile = new JMenuItem(); + pdbFile.setText(MessageManager.getString("label.pdb_file")); pdbFile.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent actionEvent) { - pdbFile_actionPerformed(actionEvent); + pdbFile_actionPerformed(); } }); + + JMenuItem png = new JMenuItem(); png.setText("PNG"); png.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent actionEvent) { - png_actionPerformed(actionEvent); + makePDBImage(TYPE.PNG); } }); + + JMenuItem eps = new JMenuItem(); eps.setText("EPS"); eps.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent actionEvent) { - eps_actionPerformed(actionEvent); + makePDBImage(TYPE.EPS); } }); - viewMapping.setText("View Mapping"); + + JMenuItem viewMapping = new JMenuItem(); + viewMapping.setText(MessageManager.getString("label.view_mapping")); viewMapping.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent actionEvent) { - viewMapping_actionPerformed(actionEvent); - } - }); - viewMenu.setText("View"); - chainMenu.setText("Show Chain"); - colourMenu.setText("Colours"); - backGround.setText("Background Colour..."); - backGround.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - backGround_actionPerformed(actionEvent); - } - }); - seqColour.setSelected(true); - seqColour.setText("By Sequence"); - seqColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - seqColour_actionPerformed(actionEvent); - } - }); - chainColour.setText("By Chain"); - chainColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - chainColour_actionPerformed(actionEvent); - } - }); - chargeColour.setText("Charge & Cysteine"); - chargeColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - chargeColour_actionPerformed(actionEvent); - } - }); - zappoColour.setText("Zappo"); - zappoColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - zappoColour_actionPerformed(actionEvent); - } - }); - taylorColour.setText("Taylor"); - taylorColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - taylorColour_actionPerformed(actionEvent); - } - }); - hydroColour.setText("Hydro"); - hydroColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - hydroColour_actionPerformed(actionEvent); - } - }); - strandColour.setText("Strand"); - strandColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - strandColour_actionPerformed(actionEvent); - } - }); - helixColour.setText("Helix Propensity"); - helixColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - helixColour_actionPerformed(actionEvent); + viewMapping_actionPerformed(); } }); - turnColour.setText("Turn Propensity"); - turnColour.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - turnColour_actionPerformed(actionEvent); - } - }); - buriedColour.setText("Buried Index"); - buriedColour.addActionListener(new ActionListener() + + viewMenu = new JMenu(); + viewMenu.setText(MessageManager.getString("action.view")); + + chainMenu = new JMenu(); + chainMenu.setText(MessageManager.getString("action.show_chain")); + + fitToWindow = new JMenuItem(); + fitToWindow.setText(MessageManager.getString("label.fit_to_window")); + fitToWindow.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent actionEvent) { - buriedColour_actionPerformed(actionEvent); + fitToWindow_actionPerformed(); } }); - userColour.setText("User Defined ..."); - userColour.addActionListener(new ActionListener() + + JMenu helpMenu = new JMenu(); + helpMenu.setText(MessageManager.getString("action.help")); + helpItem = new JMenuItem(); + helpItem.setText(MessageManager.getString("label.jmol_help")); + helpItem.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent actionEvent) { - userColour_actionPerformed(actionEvent); + showHelp_actionPerformed(); } }); - helpMenu.setText("Help"); - jmolHelp.setText("Jmol Help"); - jmolHelp.addActionListener(new ActionListener() + alignStructs = new JMenuItem(); + alignStructs.setText( + MessageManager.getString("label.superpose_structures")); + alignStructs.addActionListener(new ActionListener() { + @Override public void actionPerformed(ActionEvent actionEvent) { - jmolHelp_actionPerformed(actionEvent); + alignStructsWithAllAlignPanels(); } }); - menuBar.add(fileMenu); - menuBar.add(viewMenu); - menuBar.add(colourMenu); - menuBar.add(helpMenu); + + viewerActionMenu = new JMenu(); // text set in sub-classes + viewerActionMenu.setVisible(false); + viewerActionMenu.add(alignStructs); + colourMenu = new JMenu(); + colourMenu.setText(MessageManager.getString("label.colours")); fileMenu.add(savemenu); fileMenu.add(viewMapping); savemenu.add(pdbFile); savemenu.add(png); savemenu.add(eps); viewMenu.add(chainMenu); + helpMenu.add(helpItem); - colourMenu.add(seqColour); - colourMenu.add(chainColour); - colourMenu.add(chargeColour); - colourMenu.add(zappoColour); - colourMenu.add(taylorColour); - colourMenu.add(hydroColour); - colourMenu.add(helixColour); - colourMenu.add(strandColour); - colourMenu.add(turnColour); - colourMenu.add(buriedColour); - colourMenu.add(userColour); - colourMenu.add(backGround); - - colourButtons.add(seqColour); - colourButtons.add(chainColour); - colourButtons.add(chargeColour); - colourButtons.add(zappoColour); - colourButtons.add(taylorColour); - colourButtons.add(hydroColour); - colourButtons.add(helixColour); - colourButtons.add(strandColour); - colourButtons.add(turnColour); - colourButtons.add(buriedColour); - colourButtons.add(userColour); - - helpMenu.add(jmolHelp); - } - - JMenuBar menuBar = new JMenuBar(); - - JMenu fileMenu = new JMenu(); - - JMenu savemenu = new JMenu(); - - JMenuItem pdbFile = new JMenuItem(); - - JMenuItem png = new JMenuItem(); - - JMenuItem eps = new JMenuItem(); - - JMenuItem viewMapping = new JMenuItem(); - - JMenu viewMenu = new JMenu(); - - protected JMenu chainMenu = new JMenu(); - - JMenu jMenu1 = new JMenu(); - - JMenu colourMenu = new JMenu(); - - JMenuItem backGround = new JMenuItem(); - - protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem(); - - protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem(); - - protected ButtonGroup colourButtons = new ButtonGroup(); - - JMenu helpMenu = new JMenu(); - - JMenuItem jmolHelp = new JMenuItem(); - - public void pdbFile_actionPerformed(ActionEvent actionEvent) - { - - } - - public void png_actionPerformed(ActionEvent actionEvent) - { - - } - - public void eps_actionPerformed(ActionEvent actionEvent) - { - - } - - public void viewMapping_actionPerformed(ActionEvent actionEvent) - { - - } - - public void seqColour_actionPerformed(ActionEvent actionEvent) - { + menuBar.add(fileMenu); + menuBar.add(viewMenu); + menuBar.add(colourMenu); + menuBar.add(viewerActionMenu); + menuBar.add(helpMenu); + statusPanel = new JPanel(); + statusPanel.setLayout(new GridLayout()); + this.getContentPane().add(statusPanel, BorderLayout.SOUTH); + statusBar = new JLabel(); + statusPanel.add(statusBar, null); } - public void chainColour_actionPerformed(ActionEvent actionEvent) + protected void fitToWindow_actionPerformed() { - } - public void chargeColour_actionPerformed(ActionEvent actionEvent) + protected void highlightSelection_actionPerformed() { - } - public void zappoColour_actionPerformed(ActionEvent actionEvent) + protected void viewerColour_actionPerformed() { - } - public void taylorColour_actionPerformed(ActionEvent actionEvent) - { - - } + protected abstract String alignStructsWithAllAlignPanels(); - public void hydroColour_actionPerformed(ActionEvent actionEvent) + public void pdbFile_actionPerformed() { } - public void helixColour_actionPerformed(ActionEvent actionEvent) + public void makePDBImage(TYPE imageType) { } - public void strandColour_actionPerformed(ActionEvent actionEvent) + public void viewMapping_actionPerformed() { } - public void turnColour_actionPerformed(ActionEvent actionEvent) + public void seqColour_actionPerformed() { } - public void buriedColour_actionPerformed(ActionEvent actionEvent) + public void chainColour_actionPerformed() { } - public void userColour_actionPerformed(ActionEvent actionEvent) + public void chargeColour_actionPerformed() { } - public void backGround_actionPerformed(ActionEvent actionEvent) + public void background_actionPerformed() { } - public void jmolHelp_actionPerformed(ActionEvent actionEvent) + public void showHelp_actionPerformed() { }