X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGStructureViewer.java;h=d2bebc32cd25a9511eab53edf14eecc086ebf26f;hb=506d60f0e188723ddc91c26824b41ac7034df3fe;hp=d60e5fad47716cc2b11c2267b68e57c1e336f29b;hpb=ea1bc94cb0d4ea4b877101cb7d93283ed4a199fe;p=jalview.git diff --git a/src/jalview/jbgui/GStructureViewer.java b/src/jalview/jbgui/GStructureViewer.java index d60e5fa..d2bebc3 100644 --- a/src/jalview/jbgui/GStructureViewer.java +++ b/src/jalview/jbgui/GStructureViewer.java @@ -1,120 +1,344 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ - -package jalview.jbgui; - -import javax.swing.*; -import java.awt.event.ActionListener; -import java.awt.event.ActionEvent; - -public class GStructureViewer extends JInternalFrame -{ - public GStructureViewer() - { - try - { - jbInit(); - } - catch (Exception ex) - { - ex.printStackTrace(); - } - } - - private void jbInit() - throws Exception - { - this.setJMenuBar(menuBar); - fileMenu.setText("File"); - savemenu.setActionCommand("Save Image"); - savemenu.setText("Save As"); - pdbFile.setText("PDB File"); - pdbFile.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - pdbFile_actionPerformed(actionEvent); - } - }); - png.setText("PNG"); - png.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - png_actionPerformed(actionEvent); - } - }); - eps.setText("EPS"); - eps.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - eps_actionPerformed(actionEvent); - } - }); - viewMapping.setText("View Mapping"); - viewMapping.addActionListener(new ActionListener() - { - public void actionPerformed(ActionEvent actionEvent) - { - viewMapping_actionPerformed(actionEvent); - } - }); - viewMenu.setText("View"); - chainMenu.setText("Show Chain"); - menuBar.add(fileMenu); - menuBar.add(viewMenu); - fileMenu.add(savemenu); - fileMenu.add(viewMapping); - savemenu.add(pdbFile); - savemenu.add(png); - savemenu.add(eps); - viewMenu.add(chainMenu); - } - - JMenuBar menuBar = new JMenuBar(); - JMenu fileMenu = new JMenu(); - JMenu savemenu = new JMenu(); - JMenuItem pdbFile = new JMenuItem(); - JMenuItem png = new JMenuItem(); - JMenuItem eps = new JMenuItem(); - JMenuItem viewMapping = new JMenuItem(); - JMenu viewMenu = new JMenu(); - protected JMenu chainMenu = new JMenu(); - JMenu jMenu1 = new JMenu(); - public void pdbFile_actionPerformed(ActionEvent actionEvent) - { - - } - - public void png_actionPerformed(ActionEvent actionEvent) - { - - } - - public void eps_actionPerformed(ActionEvent actionEvent) - { - - } - - public void viewMapping_actionPerformed(ActionEvent actionEvent) - { - - } -} +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) + * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + */ +package jalview.jbgui; + +import javax.swing.*; +import java.awt.event.ActionListener; +import java.awt.event.ActionEvent; + +public class GStructureViewer extends JInternalFrame +{ + public GStructureViewer() + { + try + { + jbInit(); + } catch (Exception ex) + { + ex.printStackTrace(); + } + } + + private void jbInit() throws Exception + { + this.setJMenuBar(menuBar); + fileMenu.setText("File"); + savemenu.setActionCommand("Save Image"); + savemenu.setText("Save As"); + pdbFile.setText("PDB File"); + pdbFile.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + pdbFile_actionPerformed(actionEvent); + } + }); + png.setText("PNG"); + png.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + png_actionPerformed(actionEvent); + } + }); + eps.setText("EPS"); + eps.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + eps_actionPerformed(actionEvent); + } + }); + viewMapping.setText("View Mapping"); + viewMapping.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + viewMapping_actionPerformed(actionEvent); + } + }); + viewMenu.setText("View"); + chainMenu.setText("Show Chain"); + colourMenu.setText("Colours"); + backGround.setText("Background Colour..."); + backGround.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + backGround_actionPerformed(actionEvent); + } + }); + seqColour.setSelected(true); + seqColour.setText("By Sequence"); + seqColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + seqColour_actionPerformed(actionEvent); + } + }); + chainColour.setText("By Chain"); + chainColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + chainColour_actionPerformed(actionEvent); + } + }); + chargeColour.setText("Charge & Cysteine"); + chargeColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + chargeColour_actionPerformed(actionEvent); + } + }); + zappoColour.setText("Zappo"); + zappoColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + zappoColour_actionPerformed(actionEvent); + } + }); + taylorColour.setText("Taylor"); + taylorColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + taylorColour_actionPerformed(actionEvent); + } + }); + hydroColour.setText("Hydro"); + hydroColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + hydroColour_actionPerformed(actionEvent); + } + }); + strandColour.setText("Strand"); + strandColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + strandColour_actionPerformed(actionEvent); + } + }); + helixColour.setText("Helix Propensity"); + helixColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + helixColour_actionPerformed(actionEvent); + } + }); + turnColour.setText("Turn Propensity"); + turnColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + turnColour_actionPerformed(actionEvent); + } + }); + buriedColour.setText("Buried Index"); + buriedColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + buriedColour_actionPerformed(actionEvent); + } + }); + userColour.setText("User Defined ..."); + userColour.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + userColour_actionPerformed(actionEvent); + } + }); + helpMenu.setText("Help"); + jmolHelp.setText("Jmol Help"); + jmolHelp.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent actionEvent) + { + jmolHelp_actionPerformed(actionEvent); + } + }); + menuBar.add(fileMenu); + menuBar.add(viewMenu); + menuBar.add(colourMenu); + menuBar.add(helpMenu); + fileMenu.add(savemenu); + fileMenu.add(viewMapping); + savemenu.add(pdbFile); + savemenu.add(png); + savemenu.add(eps); + viewMenu.add(chainMenu); + colourMenu.add(seqColour); + colourMenu.add(chainColour); + colourMenu.add(chargeColour); + colourMenu.add(zappoColour); + colourMenu.add(taylorColour); + colourMenu.add(hydroColour); + colourMenu.add(helixColour); + colourMenu.add(strandColour); + colourMenu.add(turnColour); + colourMenu.add(buriedColour); + colourMenu.add(userColour); + colourMenu.add(backGround); + helpMenu.add(jmolHelp); + } + + JMenuBar menuBar = new JMenuBar(); + + JMenu fileMenu = new JMenu(); + + JMenu savemenu = new JMenu(); + + JMenuItem pdbFile = new JMenuItem(); + + JMenuItem png = new JMenuItem(); + + JMenuItem eps = new JMenuItem(); + + JMenuItem viewMapping = new JMenuItem(); + + JMenu viewMenu = new JMenu(); + + protected JMenu chainMenu = new JMenu(); + + JMenu jMenu1 = new JMenu(); + + JMenu colourMenu = new JMenu(); + + JMenuItem backGround = new JMenuItem(); + + protected JCheckBoxMenuItem seqColour = new JCheckBoxMenuItem(); + + JMenuItem chainColour = new JMenuItem(); + + JMenuItem chargeColour = new JMenuItem(); + + JMenuItem zappoColour = new JMenuItem(); + + JMenuItem taylorColour = new JMenuItem(); + + JMenuItem hydroColour = new JMenuItem(); + + JMenuItem strandColour = new JMenuItem(); + + JMenuItem helixColour = new JMenuItem(); + + JMenuItem turnColour = new JMenuItem(); + + JMenuItem buriedColour = new JMenuItem(); + + JMenuItem userColour = new JMenuItem(); + + JMenu helpMenu = new JMenu(); + + JMenuItem jmolHelp = new JMenuItem(); + + public void pdbFile_actionPerformed(ActionEvent actionEvent) + { + + } + + public void png_actionPerformed(ActionEvent actionEvent) + { + + } + + public void eps_actionPerformed(ActionEvent actionEvent) + { + + } + + public void viewMapping_actionPerformed(ActionEvent actionEvent) + { + + } + + public void seqColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void chainColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void chargeColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void zappoColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void taylorColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void hydroColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void helixColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void strandColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void turnColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void buriedColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void userColour_actionPerformed(ActionEvent actionEvent) + { + + } + + public void backGround_actionPerformed(ActionEvent actionEvent) + { + + } + + public void jmolHelp_actionPerformed(ActionEvent actionEvent) + { + + } +}