X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGTreePanel.java;h=53c12482dc8beea1ff135b79cd95c29cb7058a28;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=25829ae727f03107deacc26e3e1080adf11c0148;hpb=1b4d9b2a5fd612994de07db18d0f6466c034b934;p=jalview.git diff --git a/src/jalview/jbgui/GTreePanel.java b/src/jalview/jbgui/GTreePanel.java index 25829ae..53c1248 100755 --- a/src/jalview/jbgui/GTreePanel.java +++ b/src/jalview/jbgui/GTreePanel.java @@ -1,51 +1,92 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + */ package jalview.jbgui; import java.awt.*; -import javax.swing.*; import java.awt.event.*; +import javax.swing.*; +import javax.swing.event.*; public class GTreePanel extends JInternalFrame { BorderLayout borderLayout1 = new BorderLayout(); - protected JScrollPane scrollPane = new JScrollPane(); + + public JScrollPane scrollPane = new JScrollPane(); + JMenuBar jMenuBar1 = new JMenuBar(); - JMenu jMenu1 = new JMenu(); - JMenuItem saveMenu = new JMenuItem(); + + JMenu fileMenu = new JMenu(); + + JMenuItem saveAsNewick = new JMenuItem(); + JMenuItem printMenu = new JMenuItem(); - JMenu jMenu2 = new JMenu(); - protected JMenuItem fontSize = new JMenuItem(); - protected JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem(); + + protected JMenu viewMenu = new JMenu(); + + public JMenuItem font = new JMenuItem(); + + public JMenuItem sortAssocViews = new JMenuItem(); + + public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem(); + + public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem(); + + public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem(); + + public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem(); + JMenuItem pngTree = new JMenuItem(); + JMenuItem epsTree = new JMenuItem(); + JMenu saveAsMenu = new JMenu(); + + JMenuItem textbox = new JMenuItem(); + + public JMenuItem originalSeqData = new JMenuItem(); + + protected JMenu associateLeavesMenu = new JMenu(); + public GTreePanel() { try { jbInit(); this.setJMenuBar(jMenuBar1); - } - catch(Exception e) + } catch (Exception e) { e.printStackTrace(); } - } + private void jbInit() throws Exception { this.getContentPane().setLayout(borderLayout1); this.setBackground(Color.white); this.setFont(new java.awt.Font("Verdana", 0, 12)); scrollPane.setOpaque(false); - jMenu1.setText("File"); - saveMenu.setText("Save"); - saveMenu.addActionListener(new java.awt.event.ActionListener() + fileMenu.setText("File"); + saveAsNewick.setText("Newick Format"); + saveAsNewick.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) { - saveMenu_actionPerformed(e); + saveAsNewick_actionPerformed(e); } }); printMenu.setText("Print"); @@ -56,16 +97,39 @@ public class GTreePanel extends JInternalFrame printMenu_actionPerformed(e); } }); - jMenu2.setText("View"); - fontSize.setText("Font Size - 12"); - fontSize.addActionListener(new java.awt.event.ActionListener() + viewMenu.setText("View"); + viewMenu.addMenuListener(new MenuListener() + { + public void menuSelected(MenuEvent e) + { + viewMenu_menuSelected(); + } + + public void menuDeselected(MenuEvent e) + { + } + + public void menuCanceled(MenuEvent e) + { + } + }); + sortAssocViews.setText("Sort Alignment By Tree"); + sortAssocViews.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) { - fontSize_actionPerformed(e); + sortByTree_actionPerformed(e); } }); - bootstrapMenu.setText("Show Bootstrap values"); + font.setText("Font..."); + font.addActionListener(new java.awt.event.ActionListener() + { + public void actionPerformed(ActionEvent e) + { + font_actionPerformed(e); + } + }); + bootstrapMenu.setText("Show Bootstrap Values"); bootstrapMenu.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) @@ -82,7 +146,7 @@ public class GTreePanel extends JInternalFrame } }); fitToWindow.setSelected(true); - fitToWindow.setText("Fit to window"); + fitToWindow.setText("Fit To Window"); fitToWindow.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) @@ -90,7 +154,7 @@ public class GTreePanel extends JInternalFrame fitToWindow_actionPerformed(e); } }); - epsTree.setText("Save as EPS file"); + epsTree.setText("EPS"); epsTree.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) @@ -98,7 +162,7 @@ public class GTreePanel extends JInternalFrame epsTree_actionPerformed(e); } }); - pngTree.setText("Save as PNG image"); + pngTree.setText("PNG"); pngTree.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) @@ -106,55 +170,107 @@ public class GTreePanel extends JInternalFrame pngTree_actionPerformed(e); } }); + saveAsMenu.setText("Save as"); + placeholdersMenu + .setToolTipText("Marks leaves of tree not associated with a sequence"); + placeholdersMenu.setText("Mark Unlinked Leaves"); + placeholdersMenu.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + placeholdersMenu_actionPerformed(e); + } + }); + textbox.setText("Output to Textbox..."); + textbox.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + textbox_actionPerformed(e); + } + }); + originalSeqData.setText("Input Data..."); + originalSeqData.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + originalSeqData_actionPerformed(e); + } + }); + associateLeavesMenu.setText("Associate Leaves With"); this.getContentPane().add(scrollPane, BorderLayout.CENTER); - jMenuBar1.add(jMenu1); - jMenuBar1.add(jMenu2); - jMenu1.add(saveMenu); - jMenu1.add(epsTree); - jMenu1.add(pngTree); - jMenu1.add(printMenu); - jMenu2.add(fitToWindow); - jMenu2.add(fontSize); - jMenu2.add(distanceMenu); - jMenu2.add(bootstrapMenu); + jMenuBar1.add(fileMenu); + jMenuBar1.add(viewMenu); + fileMenu.add(saveAsMenu); + fileMenu.add(textbox); + fileMenu.add(printMenu); + fileMenu.add(originalSeqData); + viewMenu.add(fitToWindow); + viewMenu.add(font); + viewMenu.add(distanceMenu); + viewMenu.add(bootstrapMenu); + viewMenu.add(placeholdersMenu); + viewMenu.add(sortAssocViews); + viewMenu.add(associateLeavesMenu); + saveAsMenu.add(saveAsNewick); + saveAsMenu.add(epsTree); + saveAsMenu.add(pngTree); } - protected void saveMenu_actionPerformed(ActionEvent e) + public void printMenu_actionPerformed(ActionEvent e) { + } + public void font_actionPerformed(ActionEvent e) + { } - protected void printMenu_actionPerformed(ActionEvent e) + public void distanceMenu_actionPerformed(ActionEvent e) { + } + public void bootstrapMenu_actionPerformed(ActionEvent e) + { } - protected void fontSize_actionPerformed(ActionEvent e) + public void fitToWindow_actionPerformed(ActionEvent e) { + } + public void pngTree_actionPerformed(ActionEvent e) + { } - protected void distanceMenu_actionPerformed(ActionEvent e) + public void epsTree_actionPerformed(ActionEvent e) { + } + public void saveAsNewick_actionPerformed(ActionEvent e) + { } - protected void bootstrapMenu_actionPerformed(ActionEvent e) + public void placeholdersMenu_actionPerformed(ActionEvent e) { + } + public void textbox_actionPerformed(ActionEvent e) + { } - protected void fitToWindow_actionPerformed(ActionEvent e) + public void fullid_actionPerformed(ActionEvent e) { } - protected void pngTree_actionPerformed(ActionEvent e) + public void originalSeqData_actionPerformed(ActionEvent e) { } - protected void epsTree_actionPerformed(ActionEvent e) + public void viewMenu_menuSelected() + { + } + public void sortByTree_actionPerformed(ActionEvent e) { }