X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGTreePanel.java;h=5d3b8b897520de0b9851d8b49e0060271197bd68;hb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;hp=fe1fe816895fc4a5ab9028c4389a7ff2f5514a73;hpb=f00065029015828664519f71054d1a0653b55937;p=jalview.git diff --git a/src/jalview/jbgui/GTreePanel.java b/src/jalview/jbgui/GTreePanel.java index fe1fe81..5d3b8b8 100755 --- a/src/jalview/jbgui/GTreePanel.java +++ b/src/jalview/jbgui/GTreePanel.java @@ -1,26 +1,49 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer + * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * + * This program is free software; you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation; either version 2 + * of the License, or (at your option) any later version. + * + * This program is distributed in the hope that it will be useful, + * but WITHOUT ANY WARRANTY; without even the implied warranty of + * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the + * GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with this program; if not, write to the Free Software + * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + */ package jalview.jbgui; import java.awt.*; -import javax.swing.*; import java.awt.event.*; +import javax.swing.*; +import javax.swing.event.*; -public class GTreePanel extends JInternalFrame +public class GTreePanel + extends JInternalFrame { BorderLayout borderLayout1 = new BorderLayout(); - protected JScrollPane scrollPane = new JScrollPane(); + public JScrollPane scrollPane = new JScrollPane(); JMenuBar jMenuBar1 = new JMenuBar(); - JMenu jMenu1 = new JMenu(); + JMenu fileMenu = new JMenu(); JMenuItem saveAsNewick = new JMenuItem(); JMenuItem printMenu = new JMenuItem(); - JMenu jMenu2 = new JMenu(); - protected JMenuItem fontSize = new JMenuItem(); - protected JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem(); - protected JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem(); + protected JMenu viewMenu = new JMenu(); + public JMenuItem font = new JMenuItem(); + public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem(); + public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem(); JMenuItem pngTree = new JMenuItem(); JMenuItem epsTree = new JMenuItem(); JMenu saveAsMenu = new JMenu(); - + JMenuItem textbox = new JMenuItem(); + public JMenuItem originalSeqData = new JMenuItem(); + protected JMenu associateLeavesMenu = new JMenu(); public GTreePanel() { try @@ -28,20 +51,21 @@ public class GTreePanel extends JInternalFrame jbInit(); this.setJMenuBar(jMenuBar1); } - catch(Exception e) + catch (Exception e) { e.printStackTrace(); } - } - private void jbInit() throws Exception + + private void jbInit() + throws Exception { this.getContentPane().setLayout(borderLayout1); this.setBackground(Color.white); this.setFont(new java.awt.Font("Verdana", 0, 12)); scrollPane.setOpaque(false); - jMenu1.setText("File"); - saveAsNewick.setText("Newick format"); + fileMenu.setText("File"); + saveAsNewick.setText("Newick Format"); saveAsNewick.addActionListener(new ActionListener() { public void actionPerformed(ActionEvent e) @@ -57,16 +81,31 @@ public class GTreePanel extends JInternalFrame printMenu_actionPerformed(e); } }); - jMenu2.setText("View"); - fontSize.setText("Font Size - 12"); - fontSize.addActionListener(new java.awt.event.ActionListener() + viewMenu.setText("View"); + viewMenu.addMenuListener(new MenuListener() + { + public void menuSelected(MenuEvent e) + { + viewMenu_menuSelected(); + } + + public void menuDeselected(MenuEvent e) + { + } + + public void menuCanceled(MenuEvent e) + { + } + }); + font.setText("Font..."); + font.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) { - fontSize_actionPerformed(e); + font_actionPerformed(e); } }); - bootstrapMenu.setText("Show Bootstrap values"); + bootstrapMenu.setText("Show Bootstrap Values"); bootstrapMenu.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) @@ -83,7 +122,7 @@ public class GTreePanel extends JInternalFrame } }); fitToWindow.setSelected(true); - fitToWindow.setText("Fit to window"); + fitToWindow.setText("Fit To Window"); fitToWindow.addActionListener(new java.awt.event.ActionListener() { public void actionPerformed(ActionEvent e) @@ -108,59 +147,102 @@ public class GTreePanel extends JInternalFrame } }); saveAsMenu.setText("Save as"); + placeholdersMenu.setToolTipText( + "Marks leaves of tree not associated with a sequence"); + placeholdersMenu.setText("Mark Unlinked Leaves"); + placeholdersMenu.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + placeholdersMenu_actionPerformed(e); + } + }); + textbox.setText("Output to Textbox..."); + textbox.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + textbox_actionPerformed(e); + } + }); + originalSeqData.setText("Input Data..."); + originalSeqData.addActionListener(new ActionListener() + { + public void actionPerformed(ActionEvent e) + { + originalSeqData_actionPerformed(e); + } + }); + associateLeavesMenu.setText("Associate Leaves With"); this.getContentPane().add(scrollPane, BorderLayout.CENTER); - jMenuBar1.add(jMenu1); - jMenuBar1.add(jMenu2); - jMenu1.add(saveAsMenu); - jMenu1.add(printMenu); - jMenu2.add(fitToWindow); - jMenu2.add(fontSize); - jMenu2.add(distanceMenu); - jMenu2.add(bootstrapMenu); + jMenuBar1.add(fileMenu); + jMenuBar1.add(viewMenu); + fileMenu.add(saveAsMenu); + fileMenu.add(textbox); + fileMenu.add(printMenu); + fileMenu.add(originalSeqData); + viewMenu.add(fitToWindow); + viewMenu.add(font); + viewMenu.add(distanceMenu); + viewMenu.add(bootstrapMenu); + viewMenu.add(placeholdersMenu); + viewMenu.add(associateLeavesMenu); saveAsMenu.add(saveAsNewick); saveAsMenu.add(epsTree); saveAsMenu.add(pngTree); } - - protected void printMenu_actionPerformed(ActionEvent e) + public void printMenu_actionPerformed(ActionEvent e) { - } - protected void fontSize_actionPerformed(ActionEvent e) + public void font_actionPerformed(ActionEvent e) { - } - protected void distanceMenu_actionPerformed(ActionEvent e) + public void distanceMenu_actionPerformed(ActionEvent e) { + } + public void bootstrapMenu_actionPerformed(ActionEvent e) + { } - protected void bootstrapMenu_actionPerformed(ActionEvent e) + public void fitToWindow_actionPerformed(ActionEvent e) { + } + public void pngTree_actionPerformed(ActionEvent e) + { } - protected void fitToWindow_actionPerformed(ActionEvent e) + public void epsTree_actionPerformed(ActionEvent e) { + } + public void saveAsNewick_actionPerformed(ActionEvent e) + { } - protected void pngTree_actionPerformed(ActionEvent e) + public void placeholdersMenu_actionPerformed(ActionEvent e) { + } + public void textbox_actionPerformed(ActionEvent e) + { } - protected void epsTree_actionPerformed(ActionEvent e) + public void fullid_actionPerformed(ActionEvent e) { } - public void saveAsNewick_actionPerformed(ActionEvent e) + public void originalSeqData_actionPerformed(ActionEvent e) { } + public void viewMenu_menuSelected() + { + } }