X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FGTreePanel.java;h=a70920ce0fc8e407e85a8cac95e2cdc4cd1f6e6e;hb=10ddc20a773099eaf0dc4d9d1bbb3b88b4176ed4;hp=27b5c5c5c10a723054a862104ebf24a948f5d91e;hpb=a7eff74f18498e209c422b7cd090e294b36806dc;p=jalview.git

diff --git a/src/jalview/jbgui/GTreePanel.java b/src/jalview/jbgui/GTreePanel.java
index 27b5c5c..a70920c 100755
--- a/src/jalview/jbgui/GTreePanel.java
+++ b/src/jalview/jbgui/GTreePanel.java
@@ -1,26 +1,46 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer
+ * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ *
+ * This program is free software; you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation; either version 2
+ * of the License, or (at your option) any later version.
+ *
+ * This program is distributed in the hope that it will be useful,
+ * but WITHOUT ANY WARRANTY; without even the implied warranty of
+ * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ * GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with this program; if not, write to the Free Software
+ * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
+ */
 package jalview.jbgui;
 
 import java.awt.*;
-import javax.swing.*;
 import java.awt.event.*;
+import javax.swing.*;
 
-public class GTreePanel extends JInternalFrame
+public class GTreePanel
+    extends JInternalFrame
 {
   BorderLayout borderLayout1 = new BorderLayout();
-  protected JScrollPane scrollPane = new JScrollPane();
+  public JScrollPane scrollPane = new JScrollPane();
   JMenuBar jMenuBar1 = new JMenuBar();
   JMenu jMenu1 = new JMenu();
   JMenuItem saveAsNewick = new JMenuItem();
   JMenuItem printMenu = new JMenuItem();
   JMenu jMenu2 = new JMenu();
-  protected JMenuItem fontSize = new JMenuItem();
-  protected JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
-  protected JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
-  protected JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
+  public JMenuItem font = new JMenuItem();
+  public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
+  public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
+  public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
+  public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();
   JMenuItem pngTree = new JMenuItem();
   JMenuItem epsTree = new JMenuItem();
   JMenu saveAsMenu = new JMenu();
-
+  JMenuItem textbox = new JMenuItem();
   public GTreePanel()
   {
     try
@@ -28,13 +48,14 @@ public class GTreePanel extends JInternalFrame
       jbInit();
       this.setJMenuBar(jMenuBar1);
     }
-    catch(Exception e)
+    catch (Exception e)
     {
       e.printStackTrace();
     }
-
   }
-  private void jbInit() throws Exception
+
+  private void jbInit()
+      throws Exception
   {
     this.getContentPane().setLayout(borderLayout1);
     this.setBackground(Color.white);
@@ -58,15 +79,15 @@ public class GTreePanel extends JInternalFrame
       }
     });
     jMenu2.setText("View");
-    fontSize.setText("Font Size - 12");
-    fontSize.addActionListener(new java.awt.event.ActionListener()
+    font.setText("Font...");
+    font.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
       {
-        fontSize_actionPerformed(e);
+        font_actionPerformed(e);
       }
     });
-    bootstrapMenu.setText("Show Bootstrap values");
+    bootstrapMenu.setText("Show Bootstrap Values");
     bootstrapMenu.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -83,7 +104,7 @@ public class GTreePanel extends JInternalFrame
       }
     });
     fitToWindow.setSelected(true);
-    fitToWindow.setText("Fit to window");
+    fitToWindow.setText("Fit To Window");
     fitToWindow.addActionListener(new java.awt.event.ActionListener()
     {
       public void actionPerformed(ActionEvent e)
@@ -108,59 +129,82 @@ public class GTreePanel extends JInternalFrame
       }
     });
     saveAsMenu.setText("Save as");
+    placeholdersMenu.setToolTipText(
+        "Marks leaves of tree not associated with a sequence");
+    placeholdersMenu.setText("Mark Unlinked Leaves");
+    placeholdersMenu.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        placeholdersMenu_actionPerformed(e);
+      }
+    });
+    textbox.setText("Output to Textbox...");
+    textbox.addActionListener(new ActionListener()
+    {
+      public void actionPerformed(ActionEvent e)
+      {
+        textbox_actionPerformed(e);
+      }
+    });
     this.getContentPane().add(scrollPane, BorderLayout.CENTER);
     jMenuBar1.add(jMenu1);
     jMenuBar1.add(jMenu2);
     jMenu1.add(saveAsMenu);
+    jMenu1.add(textbox);
     jMenu1.add(printMenu);
     jMenu2.add(fitToWindow);
-    jMenu2.add(fontSize);
+    jMenu2.add(font);
     jMenu2.add(distanceMenu);
     jMenu2.add(bootstrapMenu);
+    jMenu2.add(placeholdersMenu);
     saveAsMenu.add(saveAsNewick);
     saveAsMenu.add(epsTree);
     saveAsMenu.add(pngTree);
   }
 
-
-  protected void printMenu_actionPerformed(ActionEvent e)
+  public void printMenu_actionPerformed(ActionEvent e)
   {
-
   }
 
-  protected void fontSize_actionPerformed(ActionEvent e)
+  public void font_actionPerformed(ActionEvent e)
   {
-
   }
 
-  protected void distanceMenu_actionPerformed(ActionEvent e)
+  public void distanceMenu_actionPerformed(ActionEvent e)
   {
-
   }
 
-  protected void bootstrapMenu_actionPerformed(ActionEvent e)
+  public void bootstrapMenu_actionPerformed(ActionEvent e)
   {
-
   }
 
-  protected void fitToWindow_actionPerformed(ActionEvent e)
+  public void fitToWindow_actionPerformed(ActionEvent e)
   {
+  }
 
+  public void pngTree_actionPerformed(ActionEvent e)
+  {
   }
 
-  protected void pngTree_actionPerformed(ActionEvent e)
+  public void epsTree_actionPerformed(ActionEvent e)
   {
+  }
 
+  public void saveAsNewick_actionPerformed(ActionEvent e)
+  {
   }
 
-  protected void epsTree_actionPerformed(ActionEvent e)
+  public void placeholdersMenu_actionPerformed(ActionEvent e)
   {
+  }
 
+  public void textbox_actionPerformed(ActionEvent e)
+  {
   }
 
-  public void saveAsNewick_actionPerformed(ActionEvent e)
+  public void fullid_actionPerformed(ActionEvent e)
   {
 
   }
-
 }