X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjbgui%2FPDBDocFieldPreferences.java;h=5861780128af0670ad35b8226d6b4501e7126ebd;hb=c19d2a91ca05e052e3408bf5852d88eb5d0608f1;hp=9380380e359103cf6e363b89d0a94bca5c7102aa;hpb=fd235cc7542d6e308e054a8a76580a6c511ae631;p=jalview.git

diff --git a/src/jalview/jbgui/PDBDocFieldPreferences.java b/src/jalview/jbgui/PDBDocFieldPreferences.java
index 9380380..5861780 100644
--- a/src/jalview/jbgui/PDBDocFieldPreferences.java
+++ b/src/jalview/jbgui/PDBDocFieldPreferences.java
@@ -1,11 +1,30 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b2)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.jbgui;
 
 import jalview.ws.dbsources.PDBRestClient.PDBDocField;
 
-import java.awt.Rectangle;
 import java.util.Collection;
 import java.util.HashMap;
-import java.util.HashSet;
+import java.util.LinkedHashSet;
 
 import javax.swing.JScrollPane;
 import javax.swing.JTable;
@@ -14,7 +33,6 @@ import javax.swing.table.AbstractTableModel;
 @SuppressWarnings("serial")
 public class PDBDocFieldPreferences extends JScrollPane
 {
-
   protected JTable tbl_pdbDocFieldConfig = new JTable();
 
   protected JScrollPane scrl_pdbDocFieldConfig = new JScrollPane(
@@ -22,22 +40,48 @@ public class PDBDocFieldPreferences extends JScrollPane
 
   private HashMap<String, PDBDocField> map = new HashMap<String, PDBDocField>();
 
-  private static Collection<PDBDocField> searchSummaryFields = new HashSet<PDBDocField>();
+  private static Collection<PDBDocField> searchSummaryFields = new LinkedHashSet<PDBDocField>();
+
+  private static Collection<PDBDocField> structureSummaryFields = new LinkedHashSet<PDBDocField>();
+
+  public enum PreferenceSource
+  {
+    SEARCH_SUMMARY, STRUCTURE_CHOOSER, PREFERENCES;
+  }
 
-  private static Collection<PDBDocField> structureSummaryFields = new HashSet<PDBDocField>();
+  private PreferenceSource currentSource;
 
   static
   {
     searchSummaryFields.add(PDBDocField.PDB_ID);
     searchSummaryFields.add(PDBDocField.TITLE);
+
     structureSummaryFields.add(PDBDocField.PDB_ID);
     structureSummaryFields.add(PDBDocField.TITLE);
   }
 
-  public PDBDocFieldPreferences(Rectangle position)
+  public PDBDocFieldPreferences(PreferenceSource source)
   {
-    this.setBounds(position);
+    tbl_pdbDocFieldConfig.setAutoCreateRowSorter(true);
     this.getViewport().add(tbl_pdbDocFieldConfig);
+    this.currentSource = source;
+
+    String[] columnNames = null;
+    switch (source)
+    {
+    case SEARCH_SUMMARY:
+      columnNames = new String[] { "PDB Field", "Show in search summary" };
+      break;
+    case STRUCTURE_CHOOSER:
+      columnNames = new String[] { "PDB Field", "Show in structure summary" };
+      break;
+    case PREFERENCES:
+      columnNames = new String[] { "PDB Field", "Show in search summary",
+          "Show in structure summary" };
+      break;
+    default:
+      break;
+    }
 
     Object[][] data = new Object[PDBDocField.values().length - 1][3];
     int x = 0;
@@ -48,13 +92,28 @@ public class PDBDocFieldPreferences extends JScrollPane
         continue;
       }
 
-      data[x++] = new Object[]
-      { field.getName(), searchSummaryFields.contains(field),
-          structureSummaryFields.contains(field) };
+      switch (source)
+      {
+      case SEARCH_SUMMARY:
+        data[x++] = new Object[] { field.getName(),
+            searchSummaryFields.contains(field) };
+        break;
+      case STRUCTURE_CHOOSER:
+        data[x++] = new Object[] { field.getName(),
+            structureSummaryFields.contains(field) };
+        break;
+      case PREFERENCES:
+        data[x++] = new Object[] { field.getName(),
+            searchSummaryFields.contains(field),
+            structureSummaryFields.contains(field) };
+        break;
+      default:
+        break;
+      }
       map.put(field.getName(), field);
     }
 
-    PDBFieldTableModel model = new PDBFieldTableModel(data);
+    PDBFieldTableModel model = new PDBFieldTableModel(columnNames, data);
     tbl_pdbDocFieldConfig.setModel(model);
   }
 
@@ -83,17 +142,16 @@ public class PDBDocFieldPreferences extends JScrollPane
   class PDBFieldTableModel extends AbstractTableModel
   {
 
-    public PDBFieldTableModel(Object[][] data)
+    public PDBFieldTableModel(String[] columnNames, Object[][] data)
     {
       this.data = data;
+      this.columnNames = columnNames;
     }
 
-    private String[] columnNames = new String[]
-    { "PDB Feild", "Show in search summary",
-        "Show in structure chooser summary" };
-
     private Object[][] data;
 
+    private String[] columnNames;
+
     public int getColumnCount()
     {
       return columnNames.length;
@@ -131,8 +189,30 @@ public class PDBDocFieldPreferences extends JScrollPane
     {
       // Note that the data/cell address is constant,
       // no matter where the cell appears onscreen.
-      return col == 1 || col == 2;
+      // !isPDBID(row, col) ensures the PDB_Id cell is never editable as it
+      // serves as a unique id for each row.
+      return (col == 1 || col == 2) && !isPDBID(row, col);
+
+    }
 
+    /**
+     * Determines whether the data in a given cell is a PDB ID.
+     * 
+     * @param row
+     * @param col
+     * @return
+     */
+
+    public boolean isPDBID(int row, int col)
+    {
+      boolean matched = false;
+      String name = getValueAt(row, 0).toString();
+      PDBDocField pdbField = map.get(name);
+      if (pdbField == PDBDocField.PDB_ID)
+      {
+        matched = true;
+      }
+      return matched;
     }
 
     /*
@@ -148,31 +228,40 @@ public class PDBDocFieldPreferences extends JScrollPane
 
       PDBDocField pdbField = map.get(name);
 
-      if (col == 1)
+      if (currentSource == PreferenceSource.SEARCH_SUMMARY)
       {
-        if (searchSummaryFields.contains(pdbField) && !selected)
-        {
-          searchSummaryFields.remove(pdbField);
-        }
-
-        if (!searchSummaryFields.contains(pdbField) && selected)
-        {
-          searchSummaryFields.add(pdbField);
-        }
+        updatePrefs(searchSummaryFields, pdbField, selected);
+      }
+      else if (currentSource == PreferenceSource.STRUCTURE_CHOOSER)
+      {
+        updatePrefs(structureSummaryFields, pdbField, selected);
       }
-      else if (col == 2)
+      else if (currentSource == PreferenceSource.PREFERENCES)
       {
-        if (structureSummaryFields.contains(pdbField) && !selected)
+        if (col == 1)
         {
-          structureSummaryFields.remove(pdbField);
+          updatePrefs(searchSummaryFields, pdbField, selected);
         }
-
-        if (!structureSummaryFields.contains(pdbField) && selected)
+        else if (col == 2)
         {
-          structureSummaryFields.add(pdbField);
+          updatePrefs(structureSummaryFields, pdbField, selected);
         }
       }
+    }
 
+    private void updatePrefs(Collection<PDBDocField> prefConfig,
+            PDBDocField pdbField, boolean selected)
+    {
+      if (prefConfig.contains(pdbField) && !selected)
+      {
+        prefConfig.remove(pdbField);
+      }
+
+      if (!prefConfig.contains(pdbField) && selected)
+      {
+        prefConfig.add(pdbField);
+      }
     }
+
   }
 }