X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjson%2Fbinding%2Fbiojson%2Fv1%2FSequenceFeaturesPojo.java;h=893d6834f0097054613d5bbfe4e6c83535c56db2;hb=8fce85002e6f6a5957dc95662c6a3d80fcce8e82;hp=64fee65eef1249484ffeb9cf450fea851d569811;hpb=2d11774110564c33e2e1460beab078095af22a29;p=jalview.git diff --git a/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java b/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java index 64fee65..893d683 100644 --- a/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java +++ b/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java @@ -1,3 +1,23 @@ +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. + */ package jalview.json.binding.biojson.v1; import java.util.Map; @@ -7,10 +27,14 @@ import com.github.reinert.jjschema.Attributes; public class SequenceFeaturesPojo { - @Attributes(required = true, description = "Start residue position for the sequence feature") + @Attributes( + required = true, + description = "Start residue position for the sequence feature") private int xStart; - @Attributes(required = true, description = "End residue position for the sequence feature") + @Attributes( + required = true, + description = "End residue position for the sequence feature") private int xEnd; @Attributes( @@ -20,7 +44,9 @@ public class SequenceFeaturesPojo description = "Reference to the sequence in the alignment
(more like a foreign key)") private String sequenceRef; - @Attributes(required = true, description = "The name or type of the SequenceFeature") + @Attributes( + required = true, + description = "The name or type of the SequenceFeature") private String type; @Attributes(required = false, description = "Score") @@ -28,8 +54,10 @@ public class SequenceFeaturesPojo @Attributes(required = false, description = "Description for the feature") private String description; - - @Attributes(required = false, description = "Additional metadata for the feature") + + @Attributes( + required = false, + description = "Additional metadata for the feature") private Map otherDetails; @Attributes(required = false, description = "Fill colour") @@ -38,7 +66,9 @@ public class SequenceFeaturesPojo @Attributes(required = true, description = "Feature group") private String featureGroup; - @Attributes(required = false, description = "URL links associated to the feature") + @Attributes( + required = false, + description = "URL links associated to the feature") private Vector links; public SequenceFeaturesPojo()