X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjson%2Fbinding%2Fbiojson%2Fv1%2FSequenceFeaturesPojo.java;h=893d6834f0097054613d5bbfe4e6c83535c56db2;hb=e0e94503e960ce917c5d35ce8b7c065a696d0117;hp=4c413c55dbfefb80f51d278aee81e78c54bd9bcf;hpb=8e2f91c6975f077f4313a516a46a5a42b6388b3a;p=jalview.git

diff --git a/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java b/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
index 4c413c5..893d683 100644
--- a/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
+++ b/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.json.binding.biojson.v1;
 
 import java.util.Map;
@@ -7,13 +27,14 @@ import com.github.reinert.jjschema.Attributes;
 
 public class SequenceFeaturesPojo
 {
-  @Attributes(required = true, description = "Serial version id for the <b>SeqFeature</b> object")
-  private String svid = "1.0";
-
-  @Attributes(required = true, description = "Start residue position for the sequence feature")
+  @Attributes(
+    required = true,
+    description = "Start residue position for the sequence feature")
   private int xStart;
 
-  @Attributes(required = true, description = "End residue position for the sequence feature")
+  @Attributes(
+    required = true,
+    description = "End residue position for the sequence feature")
   private int xEnd;
 
   @Attributes(
@@ -23,7 +44,9 @@ public class SequenceFeaturesPojo
     description = "Reference to the sequence in the alignment<br> (more like a foreign key)")
   private String sequenceRef;
 
-  @Attributes(required = true, description = "The name or type of the SequenceFeature")
+  @Attributes(
+    required = true,
+    description = "The name or type of the SequenceFeature")
   private String type;
 
   @Attributes(required = false, description = "Score")
@@ -31,8 +54,10 @@ public class SequenceFeaturesPojo
 
   @Attributes(required = false, description = "Description for the feature")
   private String description;
-  
-  @Attributes(required = false, description = "Additional metadata for the feature")
+
+  @Attributes(
+    required = false,
+    description = "Additional metadata for the feature")
   private Map<String, Object> otherDetails;
 
   @Attributes(required = false, description = "Fill colour")
@@ -41,7 +66,9 @@ public class SequenceFeaturesPojo
   @Attributes(required = true, description = "Feature group")
   private String featureGroup;
 
-  @Attributes(required = false, description = "URL links associated to the feature")
+  @Attributes(
+    required = false,
+    description = "URL links associated to the feature")
   private Vector<String> links;
 
   public SequenceFeaturesPojo()
@@ -153,17 +180,4 @@ public class SequenceFeaturesPojo
     this.sequenceRef = sequenceRef;
   }
 
-  public String getSvid()
-  {
-    return svid;
-  }
-
-//public Map<String, Object> getOtherDetails() {
-//	return otherDetails;
-//}
-//
-//public void setOtherDetails(Map<String, Object> otherDetails) {
-//	this.otherDetails = otherDetails;
-//}
-
 }