X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjson%2Fbinding%2Fbiojson%2Fv1%2FSequenceFeaturesPojo.java;h=893d6834f0097054613d5bbfe4e6c83535c56db2;hb=e0e94503e960ce917c5d35ce8b7c065a696d0117;hp=4c413c55dbfefb80f51d278aee81e78c54bd9bcf;hpb=8e2f91c6975f077f4313a516a46a5a42b6388b3a;p=jalview.git
diff --git a/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java b/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
index 4c413c5..893d683 100644
--- a/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
+++ b/src/jalview/json/binding/biojson/v1/SequenceFeaturesPojo.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
package jalview.json.binding.biojson.v1;
import java.util.Map;
@@ -7,13 +27,14 @@ import com.github.reinert.jjschema.Attributes;
public class SequenceFeaturesPojo
{
- @Attributes(required = true, description = "Serial version id for the SeqFeature object")
- private String svid = "1.0";
-
- @Attributes(required = true, description = "Start residue position for the sequence feature")
+ @Attributes(
+ required = true,
+ description = "Start residue position for the sequence feature")
private int xStart;
- @Attributes(required = true, description = "End residue position for the sequence feature")
+ @Attributes(
+ required = true,
+ description = "End residue position for the sequence feature")
private int xEnd;
@Attributes(
@@ -23,7 +44,9 @@ public class SequenceFeaturesPojo
description = "Reference to the sequence in the alignment
(more like a foreign key)")
private String sequenceRef;
- @Attributes(required = true, description = "The name or type of the SequenceFeature")
+ @Attributes(
+ required = true,
+ description = "The name or type of the SequenceFeature")
private String type;
@Attributes(required = false, description = "Score")
@@ -31,8 +54,10 @@ public class SequenceFeaturesPojo
@Attributes(required = false, description = "Description for the feature")
private String description;
-
- @Attributes(required = false, description = "Additional metadata for the feature")
+
+ @Attributes(
+ required = false,
+ description = "Additional metadata for the feature")
private Map otherDetails;
@Attributes(required = false, description = "Fill colour")
@@ -41,7 +66,9 @@ public class SequenceFeaturesPojo
@Attributes(required = true, description = "Feature group")
private String featureGroup;
- @Attributes(required = false, description = "URL links associated to the feature")
+ @Attributes(
+ required = false,
+ description = "URL links associated to the feature")
private Vector links;
public SequenceFeaturesPojo()
@@ -153,17 +180,4 @@ public class SequenceFeaturesPojo
this.sequenceRef = sequenceRef;
}
- public String getSvid()
- {
- return svid;
- }
-
-//public Map getOtherDetails() {
-// return otherDetails;
-//}
-//
-//public void setOtherDetails(Map otherDetails) {
-// this.otherDetails = otherDetails;
-//}
-
}