X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjson%2Fbinding%2Fbiojson%2Fv1%2FSequenceGrpPojo.java;h=2a4efe8ed6e48fa30f04c75b6ca042f57783ef35;hb=3587df3dbcbd892eedd41a42d9f4e02a8b1e96ce;hp=4bc6e3b4784241fe887ac7501cf082dd5778814c;hpb=8e2f91c6975f077f4313a516a46a5a42b6388b3a;p=jalview.git

diff --git a/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java b/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
index 4bc6e3b..2a4efe8 100644
--- a/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
+++ b/src/jalview/json/binding/biojson/v1/SequenceGrpPojo.java
@@ -1,3 +1,23 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.json.binding.biojson.v1;
 
 import java.util.ArrayList;
@@ -6,40 +26,54 @@ import com.github.reinert.jjschema.Attributes;
 
 public class SequenceGrpPojo
 {
-  @Attributes(required = true, description = "Serial version identifier for the <b>seqGroup</b> object model")
-  private String svid = "1.0";
-  
-  @Attributes(required = false, description = "The Colour Scheme applied to the Sequence Group")
+  @Attributes(
+    required = false,
+    description = "The <a href=\"#colourScheme\">Colour Scheme</a> applied to the Sequence Group")
   private String colourScheme;
 
-  @Attributes(required = true, description = "The name assigned to the seqGroup")
+  @Attributes(
+    required = true,
+    description = "The name assigned to the seqGroup")
   private String groupName;
 
-  @Attributes(required = false, description = "Serial version identifier for the <b>seqGroup</b> object model")
+  @Attributes(
+    required = false,
+    description = "Serial version identifier for the <b>seqGroup</b> object model")
   private String description;
 
-  @Attributes(required = false, description = "Determines if the seqGroup border should be visible or not")
+  @Attributes(
+    required = false,
+    description = "Determines if the seqGroup border should be visible or not")
   private boolean displayBoxes;
 
-  @Attributes(required = false, description = "Determines if the texts of the group is displayed or not")
+  @Attributes(
+    required = false,
+    description = "Determines if the texts of the group is displayed or not")
   private boolean displayText;
 
-  @Attributes(required = false, description = "Determines if the residues text for the group is coloured")
+  @Attributes(
+    required = false,
+    description = "Determines if the residues text for the group is coloured")
   private boolean colourText;
 
-  @Attributes(required = false, description = "Boolean value indicating whether residues should only be shown <br/>that are different from current reference or consensus sequence")
+  @Attributes(
+    required = false,
+    description = "Boolean value indicating whether residues should only be shown <br/>that are different from current reference or consensus sequence")
   private boolean showNonconserved;
 
-  @Attributes(required = true, description = "The index of the group’s first residue in the alignment space")
+  @Attributes(
+    required = true,
+    description = "The index of the group’s first residue in the alignment space")
   private int startRes;
 
-  @Attributes(required = true, description = "The index of the group’s last residue in the alignment space")
+  @Attributes(
+    required = true,
+    description = "The index of the group’s last residue in the alignment space")
   private int endRes;
-  
+
   @Attributes(
     required = true,
     minItems = 1,
-    maxItems = 2147483647,
     uniqueItems = true,
     description = "An array of the unique id's for the sequences belonging to the group")
   private ArrayList<String> sequenceRefs = new ArrayList<String>();
@@ -144,9 +178,4 @@ public class SequenceGrpPojo
     this.sequenceRefs = sequenceRefs;
   }
 
-  public String getSvid()
-  {
-    return svid;
-  }
-
 }