X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fjson%2Fbinding%2Fbiojson%2Fv1%2FSequencePojo.java;h=112a54bdc9e9bc687b7fcd5e2cf5aa551b9c34ed;hb=17e77c3f2949a0729322b4a8d907f3f34b6a9914;hp=5677b13e6135d8b48240697e563c779d31d56b10;hpb=8e2f91c6975f077f4313a516a46a5a42b6388b3a;p=jalview.git

diff --git a/src/jalview/json/binding/biojson/v1/SequencePojo.java b/src/jalview/json/binding/biojson/v1/SequencePojo.java
index 5677b13..112a54b 100644
--- a/src/jalview/json/binding/biojson/v1/SequencePojo.java
+++ b/src/jalview/json/binding/biojson/v1/SequencePojo.java
@@ -1,40 +1,63 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9)
+ * Copyright (C) 2015 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.json.binding.biojson.v1;
 
 import com.github.reinert.jjschema.Attributes;
 
-
-
 public class SequencePojo
 {
-  @Attributes(required = true, description = "Serial version identifier for the <b>seqs</b> object model")
-  private String svid = "1.0";
-
   @Attributes(
     required = true,
     minLength = 3,
     maxLength = 2147483647,
-    description = "Sequence residue characters. An aligned sequence may contain <br>one of the following gap characters “.”, “-” or “ ”")
+    description = "Sequence residue characters. An aligned sequence may contain <br>one of the following gap characters “.â€?, “-â€? or “ â€?")
   private String seq;
 
   @Attributes(required = true, description = "Sequence name")
   private String name;
 
-  @Attributes(required = false, description = "Sequence type", enums = {"DNA", "RNA", "Protein"})
+  @Attributes(required = false, description = "Sequence type", enums = {
+      "DNA", "RNA", "Protein" })
   private String type;
 
-  @Attributes(required = true, description = "Unique identifier for a given Sequence")
+  @Attributes(
+    required = true,
+    description = "Unique identifier for a given Sequence")
   private String id;
-  
-  @Attributes(required = false, description = "The order/position of a sequence in the alignment space")
+
+  @Attributes(
+    required = false,
+    description = "The order/position of a sequence in the alignment space")
   private int order;
-  
-  @Attributes(required = true, description = "The index of the sequence’s first residue in its source database, <br>using a one-based numbering index system")
+
+  @Attributes(
+    required = true,
+    description = "The index of the sequence’s first residue in its source database, <br>using a one-based numbering index system")
   private int start;
 
-  @Attributes(required = true, description = "The index of the sequence’s last residue in its source database, <br>using a one-based numbering index system")
+  @Attributes(
+    required = true,
+    description = "The index of the sequence’s last residue in its source database, <br>using a one-based numbering index system")
   private int end;
 
-
   public SequencePojo()
   {
   }
@@ -45,6 +68,7 @@ public class SequencePojo
     this.name = name;
     this.seq = seq;
   }
+
   public String getSeq()
   {
     return seq;
@@ -106,11 +130,6 @@ public class SequencePojo
     this.order = order;
   }
 
-  public String getSvid()
-  {
-    return svid;
-  }
-
   public String getType()
   {
     return type;