X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Frenderer%2FContactGeometry.java;h=9fd4de6cd02c2502ca94cfb106c4ab2c2d5059d4;hb=80b889f0cca49103e1b20ed806755a0719789906;hp=ad741ff3f7a8b9db277e3d88addd6bbe122e5fba;hpb=8288438dd58cfc2d1fe18a060afda0d647b85c32;p=jalview.git

diff --git a/src/jalview/renderer/ContactGeometry.java b/src/jalview/renderer/ContactGeometry.java
index ad741ff..9fd4de6 100644
--- a/src/jalview/renderer/ContactGeometry.java
+++ b/src/jalview/renderer/ContactGeometry.java
@@ -16,9 +16,9 @@ import jalview.renderer.ContactGeometry.contactInterval;
  */
 public class ContactGeometry
 {
-  
+
   final ContactListI contacts;
-  
+
   final int pixels_step;
 
   final double contacts_per_pixel;
@@ -29,7 +29,7 @@ public class ContactGeometry
 
   public ContactGeometry(final ContactListI contacts, int graphHeight)
   {
-    this.contacts=contacts;
+    this.contacts = contacts;
     this.graphHeight = graphHeight;
     contact_height = contacts.getContactHeight();
     // fractional number of contacts covering each pixel
@@ -70,14 +70,18 @@ public class ContactGeometry
     public final int pEnd;
 
   }
+
   /**
    * 
    * @param columnSelection
    * @param ci
-   * @param visibleOnly - when true, only test intersection of visible columns given matrix range 
-   * @return true if the range on the matrix specified by ci intersects with selected columns in the ContactListI's reference frame.
+   * @param visibleOnly
+   *          - when true, only test intersection of visible columns given
+   *          matrix range
+   * @return true if the range on the matrix specified by ci intersects with
+   *         selected columns in the ContactListI's reference frame.
    */
-  
+
   boolean intersects(contactInterval ci, ColumnSelection columnSelection,
           HiddenColumns hiddenColumns, boolean visibleOnly)
   {