X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Frenderer%2FContactMapRenderer.java;h=9f0cc3507590a848c250cea77f9b99419455fb38;hb=4a28fee3e0c129a01268d26e1396b045bd893fb8;hp=0514d1550f22cf54ec74803acfd12bd7149b1532;hpb=eb3e681d6e82ccdd5d312d1981dfb306e7f479f0;p=jalview.git diff --git a/src/jalview/renderer/ContactMapRenderer.java b/src/jalview/renderer/ContactMapRenderer.java index 0514d15..9f0cc35 100644 --- a/src/jalview/renderer/ContactMapRenderer.java +++ b/src/jalview/renderer/ContactMapRenderer.java @@ -1,11 +1,27 @@ -/** +/* + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. * + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.renderer; import java.awt.Color; import java.awt.Graphics; -import java.util.Iterator; import jalview.api.AlignViewportI; import jalview.datamodel.AlignmentAnnotation; @@ -230,11 +246,9 @@ public abstract class ContactMapRenderer implements AnnotationRowRendererI if (showGroups && gpcol != null && gpcol != Color.white) { // todo - could overlay group as a transparent rectangle ? - col = new Color( - (int) (((float) (col.getRed() + gpcol.getRed())) / 2f), - (int) (((float) (col.getGreen() + gpcol.getGreen())) - / 2f), - (int) (((float) (col.getBlue() + gpcol.getBlue())) / 2f)); + col = new Color((int) ((col.getRed() + gpcol.getRed()) / 2f), + (int) ((col.getGreen() + gpcol.getGreen()) / 2f), + (int) ((col.getBlue() + gpcol.getBlue()) / 2f)); } g.setColor(col); if (cgeom.pixels_step > 1)