X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Frenderer%2FScaleRenderer.java;h=d310705bb905705fee0b6465f52a4b75c0caebca;hb=290417727ff37c2d08bbe8962c6a6cd6a187cfe0;hp=9fec2565ba8eda9533914f2c1b6da3f73e3ee1dd;hpb=310fc4091cce0d48f80796fd0ce89dcf0e624ccd;p=jalview.git

diff --git a/src/jalview/renderer/ScaleRenderer.java b/src/jalview/renderer/ScaleRenderer.java
index 9fec256..d310705 100644
--- a/src/jalview/renderer/ScaleRenderer.java
+++ b/src/jalview/renderer/ScaleRenderer.java
@@ -77,8 +77,8 @@ public class ScaleRenderer
               .locateVisibleBoundsOfSequence(refSeq);
 
       refSp = refbounds[0];
-      refStartI = refbounds[4];
-      refEndI = refbounds[5];
+      refStartI = refbounds[1];
+      refEndI = refbounds[2];
       scalestartx = refSp + ((scalestartx - refSp) / 10) * 10;
     }
 
@@ -86,7 +86,7 @@ public class ScaleRenderer
     {
       scalestartx += 5;
     }
-    List<ScaleMark> marks = new ArrayList<ScaleMark>();
+    List<ScaleMark> marks = new ArrayList<>();
     String string;
     int refN, iadj;
     // todo: add a 'reference origin column' to set column number relative to