X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Frenderer%2Fseqfeatures%2FFeatureColourFinder.java;h=d5784b001af2da2cd493b463c3ea9c3ff1281817;hb=3975a73e927fe1adb8f3411f22c10a3e5e74ec73;hp=ba63834366cfa39255085207382126a677769af0;hpb=4c6cd08af580ff73cfce39bec34ae4658a4b4b34;p=jalview.git

diff --git a/src/jalview/renderer/seqfeatures/FeatureColourFinder.java b/src/jalview/renderer/seqfeatures/FeatureColourFinder.java
index ba63834..d5784b0 100644
--- a/src/jalview/renderer/seqfeatures/FeatureColourFinder.java
+++ b/src/jalview/renderer/seqfeatures/FeatureColourFinder.java
@@ -1,5 +1,26 @@
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
 package jalview.renderer.seqfeatures;
 
+import jalview.api.AlignViewportI;
 import jalview.api.FeatureRenderer;
 import jalview.api.FeaturesDisplayedI;
 import jalview.datamodel.SequenceI;
@@ -102,8 +123,16 @@ public class FeatureColourFinder
    */
   boolean noFeaturesDisplayed()
   {
-    if (featureRenderer == null
-            || !featureRenderer.getViewport().isShowSequenceFeatures())
+    if (featureRenderer == null)
+    {
+      return true;
+    }
+    AlignViewportI av = featureRenderer.getViewport();
+    if (av.isShowComplementFeatures())
+    {
+      return false;
+    }
+    if (!av.isShowSequenceFeatures())
     {
       return true;
     }