X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Frenderer%2Fseqfeatures%2FFeatureColourFinder.java;h=d5784b001af2da2cd493b463c3ea9c3ff1281817;hb=7e3a6674abdd31bf48e7e249a74eff50fd2ce589;hp=cfe27351f4fefda585df17f8aa2863ce9649343c;hpb=be762d8d9c71a7aa3121e845c45911c7192b7827;p=jalview.git

diff --git a/src/jalview/renderer/seqfeatures/FeatureColourFinder.java b/src/jalview/renderer/seqfeatures/FeatureColourFinder.java
index cfe2735..d5784b0 100644
--- a/src/jalview/renderer/seqfeatures/FeatureColourFinder.java
+++ b/src/jalview/renderer/seqfeatures/FeatureColourFinder.java
@@ -20,6 +20,7 @@
  */
 package jalview.renderer.seqfeatures;
 
+import jalview.api.AlignViewportI;
 import jalview.api.FeatureRenderer;
 import jalview.api.FeaturesDisplayedI;
 import jalview.datamodel.SequenceI;
@@ -122,8 +123,16 @@ public class FeatureColourFinder
    */
   boolean noFeaturesDisplayed()
   {
-    if (featureRenderer == null
-            || !featureRenderer.getViewport().isShowSequenceFeatures())
+    if (featureRenderer == null)
+    {
+      return true;
+    }
+    AlignViewportI av = featureRenderer.getViewport();
+    if (av.isShowComplementFeatures())
+    {
+      return false;
+    }
+    if (!av.isShowSequenceFeatures())
     {
       return true;
     }