X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Frenderer%2Fseqfeatures%2FFeatureRenderer.java;h=39d705b13f17b6f29d7a5988625a42de6a123cab;hb=c6d5255c09855fc1b0d03a085da9988a75cd3898;hp=78f4989f26068c0f056ee8e5bcb70f79191559cd;hpb=c6066cc80c98e75fd124209521845a0d8ac8b0b0;p=jalview.git

diff --git a/src/jalview/renderer/seqfeatures/FeatureRenderer.java b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
index 78f4989..39d705b 100644
--- a/src/jalview/renderer/seqfeatures/FeatureRenderer.java
+++ b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
@@ -22,6 +22,7 @@ package jalview.renderer.seqfeatures;
 
 import jalview.api.AlignViewportI;
 import jalview.api.FeatureColourI;
+import jalview.datamodel.MappedFeatures;
 import jalview.datamodel.Range;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
@@ -454,9 +455,9 @@ public class FeatureRenderer extends FeatureRendererModel
     for (int pos = visiblePositions.start; pos <= visiblePositions.end; pos++)
     {
       int column = seq.findIndex(pos);
-      List<SequenceFeature> features = fr2
+      MappedFeatures mf = fr2
               .findComplementFeaturesAtResidue(seq, pos);
-      for (SequenceFeature sf : features)
+      for (SequenceFeature sf : mf.features)
       {
         FeatureColourI fc = fr2.getFeatureStyle(sf.getType());
         Color featureColour = fr2.getColor(sf, fc);
@@ -560,11 +561,11 @@ public class FeatureRenderer extends FeatureRendererModel
     AlignViewportI complement = av.getCodingComplement();
     AlignFrame af = Desktop.getAlignFrameFor(complement);
     FeatureRendererModel fr2 = af.getFeatureRenderer();
-    List<SequenceFeature> features = fr2.findComplementFeaturesAtResidue(
+    MappedFeatures mf = fr2.findComplementFeaturesAtResidue(
             seq, seq.findPosition(column - 1));
 
     ReverseListIterator<SequenceFeature> it = new ReverseListIterator<>(
-            features);
+            mf.features);
     while (it.hasNext())
     {
       SequenceFeature sf = it.next();