X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Frenderer%2Fseqfeatures%2FFeatureRenderer.java;h=5d3aa2d2dfcc9dfc364a516205ac84c8d23686c6;hb=7c621eb034de40a389393ae4a97762328f5b3046;hp=2276913e5768dfcd3f74b877c73ea5080ab021b6;hpb=08c587d9947f357382199bdb6900c263efc62739;p=jalview.git

diff --git a/src/jalview/renderer/seqfeatures/FeatureRenderer.java b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
index 2276913..5d3aa2d 100644
--- a/src/jalview/renderer/seqfeatures/FeatureRenderer.java
+++ b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
@@ -50,6 +50,8 @@ public class FeatureRenderer extends FeatureRendererModel
 
   boolean av_validCharWidth, av_isShowSeqFeatureHeight;
 
+  private Integer currentColour;
+
   protected void updateAvConfig()
   {
     av_charHeight = av.getCharHeight();
@@ -175,8 +177,8 @@ public class FeatureRenderer extends FeatureRendererModel
   }
 
   /**
-   * This is used by the Molecule Viewer and Overview to get the accurate
-   * colourof the rendered sequence
+   * This is used by the Molecule Viewer and Overview to get the accurate colour
+   * of the rendered sequence
    */
   public synchronized int findFeatureColour(int initialCol,
           final SequenceI seq, int column)
@@ -246,7 +248,7 @@ public class FeatureRenderer extends FeatureRendererModel
       }
       else
       {
-        return ((Integer) currentColour).intValue();
+        return currentColour.intValue();
       }
     }
 
@@ -390,7 +392,7 @@ public class FeatureRenderer extends FeatureRendererModel
 
     }
 
-    if (transparency != 1.0f && g != null && transparencyAvailable)
+    if (transparency != 1.0f && g != null)
     {
       Graphics2D g2 = (Graphics2D) g;
       g2.setComposite(AlphaComposite.getInstance(AlphaComposite.SRC_OVER,
@@ -398,19 +400,6 @@ public class FeatureRenderer extends FeatureRendererModel
     }
   }
 
-  boolean transparencyAvailable = true;
-
-  protected void setTransparencyAvailable(boolean isTransparencyAvailable)
-  {
-    transparencyAvailable = isTransparencyAvailable;
-  }
-
-  @Override
-  public boolean isTransparencyAvailable()
-  {
-    return transparencyAvailable;
-  }
-
   /**
    * Called when alignment in associated view has new/modified features to
    * discover and display.