X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Frenderer%2Fseqfeatures%2FFeatureRenderer.java;h=b007365df8ac769a34a1310a28f1d67d54000085;hb=0a5ce6145bb76fc7eb8a5cc2670e20453fbedd29;hp=0d14cd91305a3b4cb2178aac098ddb6e705247c8;hpb=303e2fff7dd24d9e17a603512702a087a9cc3337;p=jalview.git

diff --git a/src/jalview/renderer/seqfeatures/FeatureRenderer.java b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
index 0d14cd9..b007365 100644
--- a/src/jalview/renderer/seqfeatures/FeatureRenderer.java
+++ b/src/jalview/renderer/seqfeatures/FeatureRenderer.java
@@ -20,6 +20,7 @@
  */
 package jalview.renderer.seqfeatures;
 
+import jalview.api.AlignViewportI;
 import jalview.datamodel.SequenceFeature;
 import jalview.datamodel.SequenceI;
 import jalview.viewmodel.seqfeatures.FeatureRendererModel;
@@ -50,6 +51,18 @@ public class FeatureRenderer extends FeatureRendererModel
 
   boolean av_validCharWidth, av_isShowSeqFeatureHeight;
 
+  private Integer currentColour;
+
+  /**
+   * Constructor given a viewport
+   * 
+   * @param viewport
+   */
+  public FeatureRenderer(AlignViewportI viewport)
+  {
+    this.av = viewport;
+  }
+
   protected void updateAvConfig()
   {
     av_charHeight = av.getCharHeight();
@@ -175,8 +188,8 @@ public class FeatureRenderer extends FeatureRendererModel
   }
 
   /**
-   * This is used by the Molecule Viewer and Overview to get the accurate
-   * colourof the rendered sequence
+   * This is used by the Molecule Viewer and Overview to get the accurate colour
+   * of the rendered sequence
    */
   public synchronized int findFeatureColour(int initialCol,
           final SequenceI seq, int column)
@@ -246,7 +259,7 @@ public class FeatureRenderer extends FeatureRendererModel
       }
       else
       {
-        return ((Integer) currentColour).intValue();
+        return currentColour.intValue();
       }
     }