X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FAlcodon.java;h=1732401b2cce861b458acd90e8c6ba1605696725;hb=cb7c4a276c52b0bb3e448e6761886fecc0e9d05c;hp=9bd0a7f4e9803f393f9e3fc8fc810c6f3701c1ee;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/Alcodon.java b/src/jalview/schemabinding/version2/Alcodon.java
index 9bd0a7f..1732401 100644
--- a/src/jalview/schemabinding/version2/Alcodon.java
+++ b/src/jalview/schemabinding/version2/Alcodon.java
@@ -1,285 +1,263 @@
-/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- * 
- * This file is part of Jalview.
- * 
- * Jalview is free software: you can redistribute it and/or
- * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- * 
- * Jalview is distributed in the hope that it will be useful, but 
- * WITHOUT ANY WARRANTY; without even the implied warranty 
- * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
- * PURPOSE.  See the GNU General Public License for more details.
- * 
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- */
-package jalview.schemabinding.version2;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-
-/**
- * Class Alcodon.
- * 
- * @version $Revision$ $Date$
- */
-public class Alcodon implements java.io.Serializable
-{
-
-  // --------------------------/
-  // - Class/Member Variables -/
-  // --------------------------/
-
-  /**
-   * Field _pos1.
-   */
-  private long _pos1;
-
-  /**
-   * keeps track of state for field: _pos1
-   */
-  private boolean _has_pos1;
-
-  /**
-   * Field _pos2.
-   */
-  private long _pos2;
-
-  /**
-   * keeps track of state for field: _pos2
-   */
-  private boolean _has_pos2;
-
-  /**
-   * Field _pos3.
-   */
-  private long _pos3;
-
-  /**
-   * keeps track of state for field: _pos3
-   */
-  private boolean _has_pos3;
-
-  // ----------------/
-  // - Constructors -/
-  // ----------------/
-
-  public Alcodon()
-  {
-    super();
-  }
-
-  // -----------/
-  // - Methods -/
-  // -----------/
-
-  /**
-     */
-  public void deletePos1()
-  {
-    this._has_pos1 = false;
-  }
-
-  /**
-     */
-  public void deletePos2()
-  {
-    this._has_pos2 = false;
-  }
-
-  /**
-     */
-  public void deletePos3()
-  {
-    this._has_pos3 = false;
-  }
-
-  /**
-   * Returns the value of field 'pos1'.
-   * 
-   * @return the value of field 'Pos1'.
-   */
-  public long getPos1()
-  {
-    return this._pos1;
-  }
-
-  /**
-   * Returns the value of field 'pos2'.
-   * 
-   * @return the value of field 'Pos2'.
-   */
-  public long getPos2()
-  {
-    return this._pos2;
-  }
-
-  /**
-   * Returns the value of field 'pos3'.
-   * 
-   * @return the value of field 'Pos3'.
-   */
-  public long getPos3()
-  {
-    return this._pos3;
-  }
-
-  /**
-   * Method hasPos1.
-   * 
-   * @return true if at least one Pos1 has been added
-   */
-  public boolean hasPos1()
-  {
-    return this._has_pos1;
-  }
-
-  /**
-   * Method hasPos2.
-   * 
-   * @return true if at least one Pos2 has been added
-   */
-  public boolean hasPos2()
-  {
-    return this._has_pos2;
-  }
-
-  /**
-   * Method hasPos3.
-   * 
-   * @return true if at least one Pos3 has been added
-   */
-  public boolean hasPos3()
-  {
-    return this._has_pos3;
-  }
-
-  /**
-   * Method isValid.
-   * 
-   * @return true if this object is valid according to the schema
-   */
-  public boolean isValid()
-  {
-    try
-    {
-      validate();
-    } catch (org.exolab.castor.xml.ValidationException vex)
-    {
-      return false;
-    }
-    return true;
-  }
-
-  /**
-   * 
-   * 
-   * @param out
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   */
-  public void marshal(final java.io.Writer out)
-          throws org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    Marshaller.marshal(this, out);
-  }
-
-  /**
-   * 
-   * 
-   * @param handler
-   * @throws java.io.IOException
-   *           if an IOException occurs during marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   */
-  public void marshal(final org.xml.sax.ContentHandler handler)
-          throws java.io.IOException,
-          org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    Marshaller.marshal(this, handler);
-  }
-
-  /**
-   * Sets the value of field 'pos1'.
-   * 
-   * @param pos1
-   *          the value of field 'pos1'.
-   */
-  public void setPos1(final long pos1)
-  {
-    this._pos1 = pos1;
-    this._has_pos1 = true;
-  }
-
-  /**
-   * Sets the value of field 'pos2'.
-   * 
-   * @param pos2
-   *          the value of field 'pos2'.
-   */
-  public void setPos2(final long pos2)
-  {
-    this._pos2 = pos2;
-    this._has_pos2 = true;
-  }
-
-  /**
-   * Sets the value of field 'pos3'.
-   * 
-   * @param pos3
-   *          the value of field 'pos3'.
-   */
-  public void setPos3(final long pos3)
-  {
-    this._pos3 = pos3;
-    this._has_pos3 = true;
-  }
-
-  /**
-   * Method unmarshal.
-   * 
-   * @param reader
-   * @throws org.exolab.castor.xml.MarshalException
-   *           if object is null or if any SAXException is thrown during
-   *           marshaling
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   * @return the unmarshaled jalview.schemabinding.version2.Alcodo
-   */
-  public static jalview.schemabinding.version2.Alcodon unmarshal(
-          final java.io.Reader reader)
-          throws org.exolab.castor.xml.MarshalException,
-          org.exolab.castor.xml.ValidationException
-  {
-    return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(
-            jalview.schemabinding.version2.Alcodon.class, reader);
-  }
-
-  /**
-   * 
-   * 
-   * @throws org.exolab.castor.xml.ValidationException
-   *           if this object is an invalid instance according to the schema
-   */
-  public void validate() throws org.exolab.castor.xml.ValidationException
-  {
-    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-    validator.validate(this);
-  }
-
-}
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+  //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class Alcodon.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class Alcodon implements java.io.Serializable {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field _pos1.
+     */
+    private long _pos1;
+
+    /**
+     * keeps track of state for field: _pos1
+     */
+    private boolean _has_pos1;
+
+    /**
+     * Field _pos2.
+     */
+    private long _pos2;
+
+    /**
+     * keeps track of state for field: _pos2
+     */
+    private boolean _has_pos2;
+
+    /**
+     * Field _pos3.
+     */
+    private long _pos3;
+
+    /**
+     * keeps track of state for field: _pos3
+     */
+    private boolean _has_pos3;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public Alcodon() {
+        super();
+    }
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     */
+    public void deletePos1(
+    ) {
+        this._has_pos1= false;
+    }
+
+    /**
+     */
+    public void deletePos2(
+    ) {
+        this._has_pos2= false;
+    }
+
+    /**
+     */
+    public void deletePos3(
+    ) {
+        this._has_pos3= false;
+    }
+
+    /**
+     * Returns the value of field 'pos1'.
+     * 
+     * @return the value of field 'Pos1'.
+     */
+    public long getPos1(
+    ) {
+        return this._pos1;
+    }
+
+    /**
+     * Returns the value of field 'pos2'.
+     * 
+     * @return the value of field 'Pos2'.
+     */
+    public long getPos2(
+    ) {
+        return this._pos2;
+    }
+
+    /**
+     * Returns the value of field 'pos3'.
+     * 
+     * @return the value of field 'Pos3'.
+     */
+    public long getPos3(
+    ) {
+        return this._pos3;
+    }
+
+    /**
+     * Method hasPos1.
+     * 
+     * @return true if at least one Pos1 has been added
+     */
+    public boolean hasPos1(
+    ) {
+        return this._has_pos1;
+    }
+
+    /**
+     * Method hasPos2.
+     * 
+     * @return true if at least one Pos2 has been added
+     */
+    public boolean hasPos2(
+    ) {
+        return this._has_pos2;
+    }
+
+    /**
+     * Method hasPos3.
+     * 
+     * @return true if at least one Pos3 has been added
+     */
+    public boolean hasPos3(
+    ) {
+        return this._has_pos3;
+    }
+
+    /**
+     * Method isValid.
+     * 
+     * @return true if this object is valid according to the schema
+     */
+    public boolean isValid(
+    ) {
+        try {
+            validate();
+        } catch (org.exolab.castor.xml.ValidationException vex) {
+            return false;
+        }
+        return true;
+    }
+
+    /**
+     * 
+     * 
+     * @param out
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void marshal(
+            final java.io.Writer out)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, out);
+    }
+
+    /**
+     * 
+     * 
+     * @param handler
+     * @throws java.io.IOException if an IOException occurs during
+     * marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     */
+    public void marshal(
+            final org.xml.sax.ContentHandler handler)
+    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, handler);
+    }
+
+    /**
+     * Sets the value of field 'pos1'.
+     * 
+     * @param pos1 the value of field 'pos1'.
+     */
+    public void setPos1(
+            final long pos1) {
+        this._pos1 = pos1;
+        this._has_pos1 = true;
+    }
+
+    /**
+     * Sets the value of field 'pos2'.
+     * 
+     * @param pos2 the value of field 'pos2'.
+     */
+    public void setPos2(
+            final long pos2) {
+        this._pos2 = pos2;
+        this._has_pos2 = true;
+    }
+
+    /**
+     * Sets the value of field 'pos3'.
+     * 
+     * @param pos3 the value of field 'pos3'.
+     */
+    public void setPos3(
+            final long pos3) {
+        this._pos3 = pos3;
+        this._has_pos3 = true;
+    }
+
+    /**
+     * Method unmarshal.
+     * 
+     * @param reader
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @return the unmarshaled jalview.schemabinding.version2.Alcodo
+     */
+    public static jalview.schemabinding.version2.Alcodon unmarshal(
+            final java.io.Reader reader)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(jalview.schemabinding.version2.Alcodon.class, reader);
+    }
+
+    /**
+     * 
+     * 
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void validate(
+    )
+    throws org.exolab.castor.xml.ValidationException {
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+        validator.validate(this);
+    }
+
+}