X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FAlcodon.java;h=923a17ae165027dcd940d6e426963d833c7a0e97;hb=865a855a4ca87eadb3e5ff284ed32ed307d9c34b;hp=cffbd9aa45108c5df6a33d14718b4c8a8e41b9de;hpb=cd07a161a10680208029f76aa46710c1032aae46;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/Alcodon.java b/src/jalview/schemabinding/version2/Alcodon.java
index cffbd9a..923a17a 100644
--- a/src/jalview/schemabinding/version2/Alcodon.java
+++ b/src/jalview/schemabinding/version2/Alcodon.java
@@ -1,263 +1,286 @@
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-
-/**
- * Class Alcodon.
- * 
- * @version $Revision$ $Date$
- */
-public class Alcodon implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _pos1.
-     */
-    private long _pos1;
-
-    /**
-     * keeps track of state for field: _pos1
-     */
-    private boolean _has_pos1;
-
-    /**
-     * Field _pos2.
-     */
-    private long _pos2;
-
-    /**
-     * keeps track of state for field: _pos2
-     */
-    private boolean _has_pos2;
-
-    /**
-     * Field _pos3.
-     */
-    private long _pos3;
-
-    /**
-     * keeps track of state for field: _pos3
-     */
-    private boolean _has_pos3;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public Alcodon() {
-        super();
-    }
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     */
-    public void deletePos1(
-    ) {
-        this._has_pos1= false;
-    }
-
-    /**
-     */
-    public void deletePos2(
-    ) {
-        this._has_pos2= false;
-    }
-
-    /**
-     */
-    public void deletePos3(
-    ) {
-        this._has_pos3= false;
-    }
-
-    /**
-     * Returns the value of field 'pos1'.
-     * 
-     * @return the value of field 'Pos1'.
-     */
-    public long getPos1(
-    ) {
-        return this._pos1;
-    }
-
-    /**
-     * Returns the value of field 'pos2'.
-     * 
-     * @return the value of field 'Pos2'.
-     */
-    public long getPos2(
-    ) {
-        return this._pos2;
-    }
-
-    /**
-     * Returns the value of field 'pos3'.
-     * 
-     * @return the value of field 'Pos3'.
-     */
-    public long getPos3(
-    ) {
-        return this._pos3;
-    }
-
-    /**
-     * Method hasPos1.
-     * 
-     * @return true if at least one Pos1 has been added
-     */
-    public boolean hasPos1(
-    ) {
-        return this._has_pos1;
-    }
-
-    /**
-     * Method hasPos2.
-     * 
-     * @return true if at least one Pos2 has been added
-     */
-    public boolean hasPos2(
-    ) {
-        return this._has_pos2;
-    }
-
-    /**
-     * Method hasPos3.
-     * 
-     * @return true if at least one Pos3 has been added
-     */
-    public boolean hasPos3(
-    ) {
-        return this._has_pos3;
-    }
-
-    /**
-     * Method isValid.
-     * 
-     * @return true if this object is valid according to the schema
-     */
-    public boolean isValid(
-    ) {
-        try {
-            validate();
-        } catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    }
-
-    /**
-     * 
-     * 
-     * @param out
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     */
-    public void marshal(
-            final java.io.Writer out)
-    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, out);
-    }
-
-    /**
-     * 
-     * 
-     * @param handler
-     * @throws java.io.IOException if an IOException occurs during
-     * marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     */
-    public void marshal(
-            final org.xml.sax.ContentHandler handler)
-    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, handler);
-    }
-
-    /**
-     * Sets the value of field 'pos1'.
-     * 
-     * @param pos1 the value of field 'pos1'.
-     */
-    public void setPos1(
-            final long pos1) {
-        this._pos1 = pos1;
-        this._has_pos1 = true;
-    }
-
-    /**
-     * Sets the value of field 'pos2'.
-     * 
-     * @param pos2 the value of field 'pos2'.
-     */
-    public void setPos2(
-            final long pos2) {
-        this._pos2 = pos2;
-        this._has_pos2 = true;
-    }
-
-    /**
-     * Sets the value of field 'pos3'.
-     * 
-     * @param pos3 the value of field 'pos3'.
-     */
-    public void setPos3(
-            final long pos3) {
-        this._pos3 = pos3;
-        this._has_pos3 = true;
-    }
-
-    /**
-     * Method unmarshal.
-     * 
-     * @param reader
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     * @return the unmarshaled jalview.schemabinding.version2.Alcodo
-     */
-    public static jalview.schemabinding.version2.Alcodon unmarshal(
-            final java.io.Reader reader)
-    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(jalview.schemabinding.version2.Alcodon.class, reader);
-    }
-
-    /**
-     * 
-     * 
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     */
-    public void validate(
-    )
-    throws org.exolab.castor.xml.ValidationException {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    }
-
-}
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *  
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ */
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class Alcodon.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class Alcodon implements java.io.Serializable
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _pos1.
+   */
+  private long _pos1;
+
+  /**
+   * keeps track of state for field: _pos1
+   */
+  private boolean _has_pos1;
+
+  /**
+   * Field _pos2.
+   */
+  private long _pos2;
+
+  /**
+   * keeps track of state for field: _pos2
+   */
+  private boolean _has_pos2;
+
+  /**
+   * Field _pos3.
+   */
+  private long _pos3;
+
+  /**
+   * keeps track of state for field: _pos3
+   */
+  private boolean _has_pos3;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public Alcodon()
+  {
+    super();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+     */
+  public void deletePos1()
+  {
+    this._has_pos1 = false;
+  }
+
+  /**
+     */
+  public void deletePos2()
+  {
+    this._has_pos2 = false;
+  }
+
+  /**
+     */
+  public void deletePos3()
+  {
+    this._has_pos3 = false;
+  }
+
+  /**
+   * Returns the value of field 'pos1'.
+   * 
+   * @return the value of field 'Pos1'.
+   */
+  public long getPos1()
+  {
+    return this._pos1;
+  }
+
+  /**
+   * Returns the value of field 'pos2'.
+   * 
+   * @return the value of field 'Pos2'.
+   */
+  public long getPos2()
+  {
+    return this._pos2;
+  }
+
+  /**
+   * Returns the value of field 'pos3'.
+   * 
+   * @return the value of field 'Pos3'.
+   */
+  public long getPos3()
+  {
+    return this._pos3;
+  }
+
+  /**
+   * Method hasPos1.
+   * 
+   * @return true if at least one Pos1 has been added
+   */
+  public boolean hasPos1()
+  {
+    return this._has_pos1;
+  }
+
+  /**
+   * Method hasPos2.
+   * 
+   * @return true if at least one Pos2 has been added
+   */
+  public boolean hasPos2()
+  {
+    return this._has_pos2;
+  }
+
+  /**
+   * Method hasPos3.
+   * 
+   * @return true if at least one Pos3 has been added
+   */
+  public boolean hasPos3()
+  {
+    return this._has_pos3;
+  }
+
+  /**
+   * Method isValid.
+   * 
+   * @return true if this object is valid according to the schema
+   */
+  public boolean isValid()
+  {
+    try
+    {
+      validate();
+    } catch (org.exolab.castor.xml.ValidationException vex)
+    {
+      return false;
+    }
+    return true;
+  }
+
+  /**
+   * 
+   * 
+   * @param out
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void marshal(final java.io.Writer out)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, out);
+  }
+
+  /**
+   * 
+   * 
+   * @param handler
+   * @throws java.io.IOException
+   *           if an IOException occurs during marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   */
+  public void marshal(final org.xml.sax.ContentHandler handler)
+          throws java.io.IOException,
+          org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, handler);
+  }
+
+  /**
+   * Sets the value of field 'pos1'.
+   * 
+   * @param pos1
+   *          the value of field 'pos1'.
+   */
+  public void setPos1(final long pos1)
+  {
+    this._pos1 = pos1;
+    this._has_pos1 = true;
+  }
+
+  /**
+   * Sets the value of field 'pos2'.
+   * 
+   * @param pos2
+   *          the value of field 'pos2'.
+   */
+  public void setPos2(final long pos2)
+  {
+    this._pos2 = pos2;
+    this._has_pos2 = true;
+  }
+
+  /**
+   * Sets the value of field 'pos3'.
+   * 
+   * @param pos3
+   *          the value of field 'pos3'.
+   */
+  public void setPos3(final long pos3)
+  {
+    this._pos3 = pos3;
+    this._has_pos3 = true;
+  }
+
+  /**
+   * Method unmarshal.
+   * 
+   * @param reader
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @return the unmarshaled jalview.schemabinding.version2.Alcodo
+   */
+  public static jalview.schemabinding.version2.Alcodon unmarshal(
+          final java.io.Reader reader)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(
+            jalview.schemabinding.version2.Alcodon.class, reader);
+  }
+
+  /**
+   * 
+   * 
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void validate() throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+    validator.validate(this);
+  }
+
+}