X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FAlcodon.java;h=f5654e9274d65c6d8693d21da26ae204c15e685b;hb=985f0371b8ea6b3dbb4e1b77d67bba7f7f180b28;hp=cffbd9aa45108c5df6a33d14718b4c8a8e41b9de;hpb=a95b88b05400d7e841f9523d4c4228c678307654;p=jalview.git
diff --git a/src/jalview/schemabinding/version2/Alcodon.java b/src/jalview/schemabinding/version2/Alcodon.java
index cffbd9a..f5654e9 100644
--- a/src/jalview/schemabinding/version2/Alcodon.java
+++ b/src/jalview/schemabinding/version2/Alcodon.java
@@ -1,263 +1,294 @@
-/*
- * This class was automatically generated with
- * Castor 1.1, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
- //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-
-/**
- * Class Alcodon.
- *
- * @version $Revision$ $Date$
- */
-public class Alcodon implements java.io.Serializable {
-
-
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
-
- /**
- * Field _pos1.
- */
- private long _pos1;
-
- /**
- * keeps track of state for field: _pos1
- */
- private boolean _has_pos1;
-
- /**
- * Field _pos2.
- */
- private long _pos2;
-
- /**
- * keeps track of state for field: _pos2
- */
- private boolean _has_pos2;
-
- /**
- * Field _pos3.
- */
- private long _pos3;
-
- /**
- * keeps track of state for field: _pos3
- */
- private boolean _has_pos3;
-
-
- //----------------/
- //- Constructors -/
- //----------------/
-
- public Alcodon() {
- super();
- }
-
-
- //-----------/
- //- Methods -/
- //-----------/
-
- /**
- */
- public void deletePos1(
- ) {
- this._has_pos1= false;
- }
-
- /**
- */
- public void deletePos2(
- ) {
- this._has_pos2= false;
- }
-
- /**
- */
- public void deletePos3(
- ) {
- this._has_pos3= false;
- }
-
- /**
- * Returns the value of field 'pos1'.
- *
- * @return the value of field 'Pos1'.
- */
- public long getPos1(
- ) {
- return this._pos1;
- }
-
- /**
- * Returns the value of field 'pos2'.
- *
- * @return the value of field 'Pos2'.
- */
- public long getPos2(
- ) {
- return this._pos2;
- }
-
- /**
- * Returns the value of field 'pos3'.
- *
- * @return the value of field 'Pos3'.
- */
- public long getPos3(
- ) {
- return this._pos3;
- }
-
- /**
- * Method hasPos1.
- *
- * @return true if at least one Pos1 has been added
- */
- public boolean hasPos1(
- ) {
- return this._has_pos1;
- }
-
- /**
- * Method hasPos2.
- *
- * @return true if at least one Pos2 has been added
- */
- public boolean hasPos2(
- ) {
- return this._has_pos2;
- }
-
- /**
- * Method hasPos3.
- *
- * @return true if at least one Pos3 has been added
- */
- public boolean hasPos3(
- ) {
- return this._has_pos3;
- }
-
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid(
- ) {
- try {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex) {
- return false;
- }
- return true;
- }
-
- /**
- *
- *
- * @param out
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- */
- public void marshal(
- final java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- Marshaller.marshal(this, out);
- }
-
- /**
- *
- *
- * @param handler
- * @throws java.io.IOException if an IOException occurs during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- */
- public void marshal(
- final org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- Marshaller.marshal(this, handler);
- }
-
- /**
- * Sets the value of field 'pos1'.
- *
- * @param pos1 the value of field 'pos1'.
- */
- public void setPos1(
- final long pos1) {
- this._pos1 = pos1;
- this._has_pos1 = true;
- }
-
- /**
- * Sets the value of field 'pos2'.
- *
- * @param pos2 the value of field 'pos2'.
- */
- public void setPos2(
- final long pos2) {
- this._pos2 = pos2;
- this._has_pos2 = true;
- }
-
- /**
- * Sets the value of field 'pos3'.
- *
- * @param pos3 the value of field 'pos3'.
- */
- public void setPos3(
- final long pos3) {
- this._pos3 = pos3;
- this._has_pos3 = true;
- }
-
- /**
- * Method unmarshal.
- *
- * @param reader
- * @throws org.exolab.castor.xml.MarshalException if object is
- * null or if any SAXException is thrown during marshaling
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- * @return the unmarshaled jalview.schemabinding.version2.Alcodo
- */
- public static jalview.schemabinding.version2.Alcodon unmarshal(
- final java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
- return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(jalview.schemabinding.version2.Alcodon.class, reader);
- }
-
- /**
- *
- *
- * @throws org.exolab.castor.xml.ValidationException if this
- * object is an invalid instance according to the schema
- */
- public void validate(
- )
- throws org.exolab.castor.xml.ValidationException {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- }
-
-}
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview.
+ * If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
+ ******************************************************************************/
+/*
+ * This class was automatically generated with
+ * Castor 1.1, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+//---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class Alcodon.
+ *
+ * @version $Revision$ $Date$
+ */
+public class Alcodon implements java.io.Serializable
+{
+
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
+
+ /**
+ * Field _pos1.
+ */
+ private long _pos1;
+
+ /**
+ * keeps track of state for field: _pos1
+ */
+ private boolean _has_pos1;
+
+ /**
+ * Field _pos2.
+ */
+ private long _pos2;
+
+ /**
+ * keeps track of state for field: _pos2
+ */
+ private boolean _has_pos2;
+
+ /**
+ * Field _pos3.
+ */
+ private long _pos3;
+
+ /**
+ * keeps track of state for field: _pos3
+ */
+ private boolean _has_pos3;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
+
+ public Alcodon()
+ {
+ super();
+ }
+
+ // -----------/
+ // - Methods -/
+ // -----------/
+
+ /**
+ */
+ public void deletePos1()
+ {
+ this._has_pos1 = false;
+ }
+
+ /**
+ */
+ public void deletePos2()
+ {
+ this._has_pos2 = false;
+ }
+
+ /**
+ */
+ public void deletePos3()
+ {
+ this._has_pos3 = false;
+ }
+
+ /**
+ * Returns the value of field 'pos1'.
+ *
+ * @return the value of field 'Pos1'.
+ */
+ public long getPos1()
+ {
+ return this._pos1;
+ }
+
+ /**
+ * Returns the value of field 'pos2'.
+ *
+ * @return the value of field 'Pos2'.
+ */
+ public long getPos2()
+ {
+ return this._pos2;
+ }
+
+ /**
+ * Returns the value of field 'pos3'.
+ *
+ * @return the value of field 'Pos3'.
+ */
+ public long getPos3()
+ {
+ return this._pos3;
+ }
+
+ /**
+ * Method hasPos1.
+ *
+ * @return true if at least one Pos1 has been added
+ */
+ public boolean hasPos1()
+ {
+ return this._has_pos1;
+ }
+
+ /**
+ * Method hasPos2.
+ *
+ * @return true if at least one Pos2 has been added
+ */
+ public boolean hasPos2()
+ {
+ return this._has_pos2;
+ }
+
+ /**
+ * Method hasPos3.
+ *
+ * @return true if at least one Pos3 has been added
+ */
+ public boolean hasPos3()
+ {
+ return this._has_pos3;
+ }
+
+ /**
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
+ */
+ public boolean isValid()
+ {
+ try
+ {
+ validate();
+ } catch (org.exolab.castor.xml.ValidationException vex)
+ {
+ return false;
+ }
+ return true;
+ }
+
+ /**
+ *
+ *
+ * @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, out);
+ }
+
+ /**
+ *
+ *
+ * @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ */
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ Marshaller.marshal(this, handler);
+ }
+
+ /**
+ * Sets the value of field 'pos1'.
+ *
+ * @param pos1
+ * the value of field 'pos1'.
+ */
+ public void setPos1(final long pos1)
+ {
+ this._pos1 = pos1;
+ this._has_pos1 = true;
+ }
+
+ /**
+ * Sets the value of field 'pos2'.
+ *
+ * @param pos2
+ * the value of field 'pos2'.
+ */
+ public void setPos2(final long pos2)
+ {
+ this._pos2 = pos2;
+ this._has_pos2 = true;
+ }
+
+ /**
+ * Sets the value of field 'pos3'.
+ *
+ * @param pos3
+ * the value of field 'pos3'.
+ */
+ public void setPos3(final long pos3)
+ {
+ this._pos3 = pos3;
+ this._has_pos3 = true;
+ }
+
+ /**
+ * Method unmarshal.
+ *
+ * @param reader
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.Alcodo
+ */
+ public static jalview.schemabinding.version2.Alcodon unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
+ {
+ return (jalview.schemabinding.version2.Alcodon) Unmarshaller.unmarshal(
+ jalview.schemabinding.version2.Alcodon.class, reader);
+ }
+
+ /**
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ */
+ public void validate() throws org.exolab.castor.xml.ValidationException
+ {
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+ validator.validate(this);
+ }
+
+}