X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FAnnotationColours.java;h=67d6ad865eaf1bd11ebff8f977f8c729cc882d24;hb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;hp=b2af2c44febcaada5dda1ed272bceac3d34d30e5;hpb=224791537adfcd1d6efff3e24fa7c653d042b222;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/AnnotationColours.java b/src/jalview/schemabinding/version2/AnnotationColours.java
index b2af2c4..67d6ad8 100755
--- a/src/jalview/schemabinding/version2/AnnotationColours.java
+++ b/src/jalview/schemabinding/version2/AnnotationColours.java
@@ -1,5 +1,5 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
@@ -7,379 +7,379 @@
 
 package jalview.schemabinding.version2;
 
-  //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
 //---------------------------------/
 
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import org.exolab.castor.xml.MarshalException;
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
+import org.exolab.castor.xml.*;
 
 /**
  * Class AnnotationColours.
- * 
+ *
  * @version $Revision$ $Date$
  */
-public class AnnotationColours implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _aboveThreshold
-     */
-    private int _aboveThreshold;
-
-    /**
-     * keeps track of state for field: _aboveThreshold
-     */
-    private boolean _has_aboveThreshold;
-
-    /**
-     * Field _annotation
-     */
-    private java.lang.String _annotation;
-
-    /**
-     * Field _minColour
-     */
-    private int _minColour;
-
-    /**
-     * keeps track of state for field: _minColour
-     */
-    private boolean _has_minColour;
-
-    /**
-     * Field _maxColour
-     */
-    private int _maxColour;
-
-    /**
-     * keeps track of state for field: _maxColour
-     */
-    private boolean _has_maxColour;
-
-    /**
-     * Field _colourScheme
-     */
-    private java.lang.String _colourScheme;
-
-    /**
-     * Field _threshold
-     */
-    private float _threshold;
-
-    /**
-     * keeps track of state for field: _threshold
-     */
-    private boolean _has_threshold;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public AnnotationColours() {
-        super();
-    } //-- jalview.schemabinding.version2.AnnotationColours()
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Method deleteAboveThreshold
-     * 
-     */
-    public void deleteAboveThreshold()
-    {
-        this._has_aboveThreshold= false;
-    } //-- void deleteAboveThreshold() 
-
-    /**
-     * Method deleteMaxColour
-     * 
-     */
-    public void deleteMaxColour()
-    {
-        this._has_maxColour= false;
-    } //-- void deleteMaxColour() 
-
-    /**
-     * Method deleteMinColour
-     * 
-     */
-    public void deleteMinColour()
-    {
-        this._has_minColour= false;
-    } //-- void deleteMinColour() 
-
-    /**
-     * Method deleteThreshold
-     * 
-     */
-    public void deleteThreshold()
-    {
-        this._has_threshold= false;
-    } //-- void deleteThreshold() 
-
-    /**
-     * Returns the value of field 'aboveThreshold'.
-     * 
-     * @return int
-     * @return the value of field 'aboveThreshold'.
-     */
-    public int getAboveThreshold()
-    {
-        return this._aboveThreshold;
-    } //-- int getAboveThreshold() 
-
-    /**
-     * Returns the value of field 'annotation'.
-     * 
-     * @return String
-     * @return the value of field 'annotation'.
-     */
-    public java.lang.String getAnnotation()
-    {
-        return this._annotation;
-    } //-- java.lang.String getAnnotation() 
-
-    /**
-     * Returns the value of field 'colourScheme'.
-     * 
-     * @return String
-     * @return the value of field 'colourScheme'.
-     */
-    public java.lang.String getColourScheme()
-    {
-        return this._colourScheme;
-    } //-- java.lang.String getColourScheme() 
-
-    /**
-     * Returns the value of field 'maxColour'.
-     * 
-     * @return int
-     * @return the value of field 'maxColour'.
-     */
-    public int getMaxColour()
-    {
-        return this._maxColour;
-    } //-- int getMaxColour() 
-
-    /**
-     * Returns the value of field 'minColour'.
-     * 
-     * @return int
-     * @return the value of field 'minColour'.
-     */
-    public int getMinColour()
-    {
-        return this._minColour;
-    } //-- int getMinColour() 
-
-    /**
-     * Returns the value of field 'threshold'.
-     * 
-     * @return float
-     * @return the value of field 'threshold'.
-     */
-    public float getThreshold()
-    {
-        return this._threshold;
-    } //-- float getThreshold() 
-
-    /**
-     * Method hasAboveThreshold
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean hasAboveThreshold()
-    {
-        return this._has_aboveThreshold;
-    } //-- boolean hasAboveThreshold() 
-
-    /**
-     * Method hasMaxColour
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean hasMaxColour()
-    {
-        return this._has_maxColour;
-    } //-- boolean hasMaxColour() 
-
-    /**
-     * Method hasMinColour
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean hasMinColour()
-    {
-        return this._has_minColour;
-    } //-- boolean hasMinColour() 
-
-    /**
-     * Method hasThreshold
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean hasThreshold()
-    {
-        return this._has_threshold;
-    } //-- boolean hasThreshold() 
-
-    /**
-     * Method isValid
-     * 
-     * 
-     * 
-     * @return boolean
-     */
-    public boolean isValid()
-    {
-        try {
-            validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    } //-- boolean isValid() 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param out
-     */
-    public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param handler
-     */
-    public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
-
-    /**
-     * Sets the value of field 'aboveThreshold'.
-     * 
-     * @param aboveThreshold the value of field 'aboveThreshold'.
-     */
-    public void setAboveThreshold(int aboveThreshold)
-    {
-        this._aboveThreshold = aboveThreshold;
-        this._has_aboveThreshold = true;
-    } //-- void setAboveThreshold(int) 
-
-    /**
-     * Sets the value of field 'annotation'.
-     * 
-     * @param annotation the value of field 'annotation'.
-     */
-    public void setAnnotation(java.lang.String annotation)
-    {
-        this._annotation = annotation;
-    } //-- void setAnnotation(java.lang.String) 
-
-    /**
-     * Sets the value of field 'colourScheme'.
-     * 
-     * @param colourScheme the value of field 'colourScheme'.
-     */
-    public void setColourScheme(java.lang.String colourScheme)
-    {
-        this._colourScheme = colourScheme;
-    } //-- void setColourScheme(java.lang.String) 
-
-    /**
-     * Sets the value of field 'maxColour'.
-     * 
-     * @param maxColour the value of field 'maxColour'.
-     */
-    public void setMaxColour(int maxColour)
-    {
-        this._maxColour = maxColour;
-        this._has_maxColour = true;
-    } //-- void setMaxColour(int) 
-
-    /**
-     * Sets the value of field 'minColour'.
-     * 
-     * @param minColour the value of field 'minColour'.
-     */
-    public void setMinColour(int minColour)
-    {
-        this._minColour = minColour;
-        this._has_minColour = true;
-    } //-- void setMinColour(int) 
-
-    /**
-     * Sets the value of field 'threshold'.
-     * 
-     * @param threshold the value of field 'threshold'.
-     */
-    public void setThreshold(float threshold)
-    {
-        this._threshold = threshold;
-        this._has_threshold = true;
-    } //-- void setThreshold(float) 
-
-    /**
-     * Method unmarshal
-     * 
-     * 
-     * 
-     * @param reader
-     * @return Object
-     */
-    public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+public class AnnotationColours
+    implements java.io.Serializable
+{
+
+  //--------------------------/
+  //- Class/Member Variables -/
+  //--------------------------/
+
+  /**
+   * Field _aboveThreshold
+   */
+  private int _aboveThreshold;
+
+  /**
+   * keeps track of state for field: _aboveThreshold
+   */
+  private boolean _has_aboveThreshold;
+
+  /**
+   * Field _annotation
+   */
+  private java.lang.String _annotation;
+
+  /**
+   * Field _minColour
+   */
+  private int _minColour;
+
+  /**
+   * keeps track of state for field: _minColour
+   */
+  private boolean _has_minColour;
+
+  /**
+   * Field _maxColour
+   */
+  private int _maxColour;
+
+  /**
+   * keeps track of state for field: _maxColour
+   */
+  private boolean _has_maxColour;
+
+  /**
+   * Field _colourScheme
+   */
+  private java.lang.String _colourScheme;
+
+  /**
+   * Field _threshold
+   */
+  private float _threshold;
+
+  /**
+   * keeps track of state for field: _threshold
+   */
+  private boolean _has_threshold;
+
+  //----------------/
+  //- Constructors -/
+  //----------------/
+
+  public AnnotationColours()
+  {
+    super();
+  } //-- jalview.schemabinding.version2.AnnotationColours()
+
+  //-----------/
+  //- Methods -/
+  //-----------/
+
+  /**
+   * Method deleteAboveThreshold
+   *
+   */
+  public void deleteAboveThreshold()
+  {
+    this._has_aboveThreshold = false;
+  } //-- void deleteAboveThreshold()
+
+  /**
+   * Method deleteMaxColour
+   *
+   */
+  public void deleteMaxColour()
+  {
+    this._has_maxColour = false;
+  } //-- void deleteMaxColour()
+
+  /**
+   * Method deleteMinColour
+   *
+   */
+  public void deleteMinColour()
+  {
+    this._has_minColour = false;
+  } //-- void deleteMinColour()
+
+  /**
+   * Method deleteThreshold
+   *
+   */
+  public void deleteThreshold()
+  {
+    this._has_threshold = false;
+  } //-- void deleteThreshold()
+
+  /**
+   * Returns the value of field 'aboveThreshold'.
+   *
+   * @return int
+   * @return the value of field 'aboveThreshold'.
+   */
+  public int getAboveThreshold()
+  {
+    return this._aboveThreshold;
+  } //-- int getAboveThreshold()
+
+  /**
+   * Returns the value of field 'annotation'.
+   *
+   * @return String
+   * @return the value of field 'annotation'.
+   */
+  public java.lang.String getAnnotation()
+  {
+    return this._annotation;
+  } //-- java.lang.String getAnnotation()
+
+  /**
+   * Returns the value of field 'colourScheme'.
+   *
+   * @return String
+   * @return the value of field 'colourScheme'.
+   */
+  public java.lang.String getColourScheme()
+  {
+    return this._colourScheme;
+  } //-- java.lang.String getColourScheme()
+
+  /**
+   * Returns the value of field 'maxColour'.
+   *
+   * @return int
+   * @return the value of field 'maxColour'.
+   */
+  public int getMaxColour()
+  {
+    return this._maxColour;
+  } //-- int getMaxColour()
+
+  /**
+   * Returns the value of field 'minColour'.
+   *
+   * @return int
+   * @return the value of field 'minColour'.
+   */
+  public int getMinColour()
+  {
+    return this._minColour;
+  } //-- int getMinColour()
+
+  /**
+   * Returns the value of field 'threshold'.
+   *
+   * @return float
+   * @return the value of field 'threshold'.
+   */
+  public float getThreshold()
+  {
+    return this._threshold;
+  } //-- float getThreshold()
+
+  /**
+   * Method hasAboveThreshold
+   *
+   *
+   *
+   * @return boolean
+   */
+  public boolean hasAboveThreshold()
+  {
+    return this._has_aboveThreshold;
+  } //-- boolean hasAboveThreshold()
+
+  /**
+   * Method hasMaxColour
+   *
+   *
+   *
+   * @return boolean
+   */
+  public boolean hasMaxColour()
+  {
+    return this._has_maxColour;
+  } //-- boolean hasMaxColour()
+
+  /**
+   * Method hasMinColour
+   *
+   *
+   *
+   * @return boolean
+   */
+  public boolean hasMinColour()
+  {
+    return this._has_minColour;
+  } //-- boolean hasMinColour()
+
+  /**
+   * Method hasThreshold
+   *
+   *
+   *
+   * @return boolean
+   */
+  public boolean hasThreshold()
+  {
+    return this._has_threshold;
+  } //-- boolean hasThreshold()
+
+  /**
+   * Method isValid
+   *
+   *
+   *
+   * @return boolean
+   */
+  public boolean isValid()
+  {
+    try
     {
-        return (jalview.schemabinding.version2.AnnotationColours) Unmarshaller.unmarshal(jalview.schemabinding.version2.AnnotationColours.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
-
-    /**
-     * Method validate
-     * 
-     */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
+      validate();
+    }
+    catch (org.exolab.castor.xml.ValidationException vex)
     {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    } //-- void validate() 
+      return false;
+    }
+    return true;
+  } //-- boolean isValid()
+
+  /**
+   * Method marshal
+   *
+   *
+   *
+   * @param out
+   */
+  public void marshal(java.io.Writer out)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+
+    Marshaller.marshal(this, out);
+  } //-- void marshal(java.io.Writer)
+
+  /**
+   * Method marshal
+   *
+   *
+   *
+   * @param handler
+   */
+  public void marshal(org.xml.sax.ContentHandler handler)
+      throws java.io.IOException, org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+
+    Marshaller.marshal(this, handler);
+  } //-- void marshal(org.xml.sax.ContentHandler)
+
+  /**
+   * Sets the value of field 'aboveThreshold'.
+   *
+   * @param aboveThreshold the value of field 'aboveThreshold'.
+   */
+  public void setAboveThreshold(int aboveThreshold)
+  {
+    this._aboveThreshold = aboveThreshold;
+    this._has_aboveThreshold = true;
+  } //-- void setAboveThreshold(int)
+
+  /**
+   * Sets the value of field 'annotation'.
+   *
+   * @param annotation the value of field 'annotation'.
+   */
+  public void setAnnotation(java.lang.String annotation)
+  {
+    this._annotation = annotation;
+  } //-- void setAnnotation(java.lang.String)
+
+  /**
+   * Sets the value of field 'colourScheme'.
+   *
+   * @param colourScheme the value of field 'colourScheme'.
+   */
+  public void setColourScheme(java.lang.String colourScheme)
+  {
+    this._colourScheme = colourScheme;
+  } //-- void setColourScheme(java.lang.String)
+
+  /**
+   * Sets the value of field 'maxColour'.
+   *
+   * @param maxColour the value of field 'maxColour'.
+   */
+  public void setMaxColour(int maxColour)
+  {
+    this._maxColour = maxColour;
+    this._has_maxColour = true;
+  } //-- void setMaxColour(int)
+
+  /**
+   * Sets the value of field 'minColour'.
+   *
+   * @param minColour the value of field 'minColour'.
+   */
+  public void setMinColour(int minColour)
+  {
+    this._minColour = minColour;
+    this._has_minColour = true;
+  } //-- void setMinColour(int)
+
+  /**
+   * Sets the value of field 'threshold'.
+   *
+   * @param threshold the value of field 'threshold'.
+   */
+  public void setThreshold(float threshold)
+  {
+    this._threshold = threshold;
+    this._has_threshold = true;
+  } //-- void setThreshold(float)
+
+  /**
+   * Method unmarshal
+   *
+   *
+   *
+   * @param reader
+   * @return Object
+   */
+  public static java.lang.Object unmarshal(java.io.Reader reader)
+      throws org.exolab.castor.xml.MarshalException,
+      org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.schemabinding.version2.AnnotationColours) Unmarshaller.
+        unmarshal(jalview.schemabinding.version2.AnnotationColours.class,
+                  reader);
+  } //-- java.lang.Object unmarshal(java.io.Reader)
+
+  /**
+   * Method validate
+   *
+   */
+  public void validate()
+      throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.
+        Validator();
+    validator.validate(this);
+  } //-- void validate()
 
 }