X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FAnnotationColours.java;h=965fc0729fde4e5797439b8253526735843227db;hb=ff2d6b48be7f17742defac9c965c70d7944d773b;hp=96ab9d81428e2511a83d8124853b5977996d8a5e;hpb=9adf6bc4eac154c1f96a2be5867ce24d7c6470f1;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/AnnotationColours.java b/src/jalview/schemabinding/version2/AnnotationColours.java
index 96ab9d8..965fc07 100644
--- a/src/jalview/schemabinding/version2/AnnotationColours.java
+++ b/src/jalview/schemabinding/version2/AnnotationColours.java
@@ -19,62 +19,9 @@ import org.exolab.castor.xml.Unmarshaller;
  * 
  * @version $Revision$ $Date$
  */
-public class AnnotationColours implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _aboveThreshold.
-     */
-    private int _aboveThreshold;
-
-    /**
-     * keeps track of state for field: _aboveThreshold
-     */
-    private boolean _has_aboveThreshold;
-
-    /**
-     * Field _annotation.
-     */
-    private java.lang.String _annotation;
-
-    /**
-     * Field _minColour.
-     */
-    private int _minColour;
-
-    /**
-     * keeps track of state for field: _minColour
-     */
-    private boolean _has_minColour;
-
-    /**
-     * Field _maxColour.
-     */
-    private int _maxColour;
-
-    /**
-     * keeps track of state for field: _maxColour
-     */
-    private boolean _has_maxColour;
-
-    /**
-     * Field _colourScheme.
-     */
-    private java.lang.String _colourScheme;
-
-    /**
-     * Field _threshold.
-     */
-    private float _threshold;
-
-    /**
-     * keeps track of state for field: _threshold
-     */
-    private boolean _has_threshold;
+public class AnnotationColours extends AnnotationColourScheme 
+implements java.io.Serializable
+{
 
 
       //----------------/
@@ -91,134 +38,6 @@ public class AnnotationColours implements java.io.Serializable {
     //-----------/
 
     /**
-     */
-    public void deleteAboveThreshold(
-    ) {
-        this._has_aboveThreshold= false;
-    }
-
-    /**
-     */
-    public void deleteMaxColour(
-    ) {
-        this._has_maxColour= false;
-    }
-
-    /**
-     */
-    public void deleteMinColour(
-    ) {
-        this._has_minColour= false;
-    }
-
-    /**
-     */
-    public void deleteThreshold(
-    ) {
-        this._has_threshold= false;
-    }
-
-    /**
-     * Returns the value of field 'aboveThreshold'.
-     * 
-     * @return the value of field 'AboveThreshold'.
-     */
-    public int getAboveThreshold(
-    ) {
-        return this._aboveThreshold;
-    }
-
-    /**
-     * Returns the value of field 'annotation'.
-     * 
-     * @return the value of field 'Annotation'.
-     */
-    public java.lang.String getAnnotation(
-    ) {
-        return this._annotation;
-    }
-
-    /**
-     * Returns the value of field 'colourScheme'.
-     * 
-     * @return the value of field 'ColourScheme'.
-     */
-    public java.lang.String getColourScheme(
-    ) {
-        return this._colourScheme;
-    }
-
-    /**
-     * Returns the value of field 'maxColour'.
-     * 
-     * @return the value of field 'MaxColour'.
-     */
-    public int getMaxColour(
-    ) {
-        return this._maxColour;
-    }
-
-    /**
-     * Returns the value of field 'minColour'.
-     * 
-     * @return the value of field 'MinColour'.
-     */
-    public int getMinColour(
-    ) {
-        return this._minColour;
-    }
-
-    /**
-     * Returns the value of field 'threshold'.
-     * 
-     * @return the value of field 'Threshold'.
-     */
-    public float getThreshold(
-    ) {
-        return this._threshold;
-    }
-
-    /**
-     * Method hasAboveThreshold.
-     * 
-     * @return true if at least one AboveThreshold has been added
-     */
-    public boolean hasAboveThreshold(
-    ) {
-        return this._has_aboveThreshold;
-    }
-
-    /**
-     * Method hasMaxColour.
-     * 
-     * @return true if at least one MaxColour has been added
-     */
-    public boolean hasMaxColour(
-    ) {
-        return this._has_maxColour;
-    }
-
-    /**
-     * Method hasMinColour.
-     * 
-     * @return true if at least one MinColour has been added
-     */
-    public boolean hasMinColour(
-    ) {
-        return this._has_minColour;
-    }
-
-    /**
-     * Method hasThreshold.
-     * 
-     * @return true if at least one Threshold has been added
-     */
-    public boolean hasThreshold(
-    ) {
-        return this._has_threshold;
-    }
-
-    /**
      * Method isValid.
      * 
      * @return true if this object is valid according to the schema
@@ -266,70 +85,6 @@ public class AnnotationColours implements java.io.Serializable {
     }
 
     /**
-     * Sets the value of field 'aboveThreshold'.
-     * 
-     * @param aboveThreshold the value of field 'aboveThreshold'.
-     */
-    public void setAboveThreshold(
-            final int aboveThreshold) {
-        this._aboveThreshold = aboveThreshold;
-        this._has_aboveThreshold = true;
-    }
-
-    /**
-     * Sets the value of field 'annotation'.
-     * 
-     * @param annotation the value of field 'annotation'.
-     */
-    public void setAnnotation(
-            final java.lang.String annotation) {
-        this._annotation = annotation;
-    }
-
-    /**
-     * Sets the value of field 'colourScheme'.
-     * 
-     * @param colourScheme the value of field 'colourScheme'.
-     */
-    public void setColourScheme(
-            final java.lang.String colourScheme) {
-        this._colourScheme = colourScheme;
-    }
-
-    /**
-     * Sets the value of field 'maxColour'.
-     * 
-     * @param maxColour the value of field 'maxColour'.
-     */
-    public void setMaxColour(
-            final int maxColour) {
-        this._maxColour = maxColour;
-        this._has_maxColour = true;
-    }
-
-    /**
-     * Sets the value of field 'minColour'.
-     * 
-     * @param minColour the value of field 'minColour'.
-     */
-    public void setMinColour(
-            final int minColour) {
-        this._minColour = minColour;
-        this._has_minColour = true;
-    }
-
-    /**
-     * Sets the value of field 'threshold'.
-     * 
-     * @param threshold the value of field 'threshold'.
-     */
-    public void setThreshold(
-            final float threshold) {
-        this._threshold = threshold;
-        this._has_threshold = true;
-    }
-
-    /**
      * Method unmarshal.
      * 
      * @param reader
@@ -338,12 +93,12 @@ public class AnnotationColours implements java.io.Serializable {
      * @throws org.exolab.castor.xml.ValidationException if this
      * object is an invalid instance according to the schema
      * @return the unmarshaled
-     * jalview.schemabinding.version2.AnnotationColours
+     * jalview.schemabinding.version2.AnnotationColourScheme
      */
-    public static jalview.schemabinding.version2.AnnotationColours unmarshal(
+    public static jalview.schemabinding.version2.AnnotationColourScheme unmarshal(
             final java.io.Reader reader)
     throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        return (jalview.schemabinding.version2.AnnotationColours) Unmarshaller.unmarshal(jalview.schemabinding.version2.AnnotationColours.class, reader);
+        return (jalview.schemabinding.version2.AnnotationColourScheme) Unmarshaller.unmarshal(jalview.schemabinding.version2.AnnotationColours.class, reader);
     }
 
     /**