X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FColour.java;h=7f4a6b1901187564f702bb45d3a78857d7ec6a8f;hb=4674dbf3f27eee61a7e21174649aa4c9ec7a04dd;hp=bcc464267797c3e4d8d4f42e9729977bab0eb2a5;hpb=48df59aa393e03aa7269b2df662ac1b8d58cbb25;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/Colour.java b/src/jalview/schemabinding/version2/Colour.java
index bcc4642..7f4a6b1 100755
--- a/src/jalview/schemabinding/version2/Colour.java
+++ b/src/jalview/schemabinding/version2/Colour.java
@@ -1,173 +1,509 @@
 /*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
- * Schema.
- * $Id$
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * 
+ * This file is part of Jalview.
+ * 
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ * 
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ * 
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  */
-
 package jalview.schemabinding.version2;
 
-  //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
 //---------------------------------/
 
-import java.io.IOException;
-import java.io.Reader;
-import java.io.Serializable;
-import java.io.Writer;
-import org.exolab.castor.xml.MarshalException;
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
-import org.exolab.castor.xml.ValidationException;
-import org.xml.sax.ContentHandler;
 
 /**
  * Class Colour.
  * 
  * @version $Revision$ $Date$
  */
-public class Colour implements java.io.Serializable {
+public class Colour implements java.io.Serializable
+{
 
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
 
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
+  /**
+   * Field _name.
+   */
+  private java.lang.String _name;
 
-    /**
-     * Field _name
-     */
-    private java.lang.String _name;
+  /**
+   * Field _RGB.
+   */
+  private java.lang.String _RGB;
 
-    /**
-     * Field _RGB
-     */
-    private java.lang.String _RGB;
+  /**
+   * Field _minRGB.
+   */
+  private java.lang.String _minRGB;
 
+  /**
+   * loosely specified enumeration: NONE,ABOVE, or BELOW
+   */
+  private java.lang.String _threshType;
 
-      //----------------/
-     //- Constructors -/
-    //----------------/
+  /**
+   * Field _threshold.
+   */
+  private float _threshold;
 
-    public Colour() {
-        super();
-    } //-- jalview.schemabinding.version2.Colour()
+  /**
+   * keeps track of state for field: _threshold
+   */
+  private boolean _has_threshold;
 
+  /**
+   * Field _max.
+   */
+  private float _max;
 
-      //-----------/
-     //- Methods -/
-    //-----------/
+  /**
+   * keeps track of state for field: _max
+   */
+  private boolean _has_max;
 
-    /**
-     * Returns the value of field 'name'.
-     * 
-     * @return String
-     * @return the value of field 'name'.
-     */
-    public java.lang.String getName()
-    {
-        return this._name;
-    } //-- java.lang.String getName() 
-
-    /**
-     * Returns the value of field 'RGB'.
-     * 
-     * @return String
-     * @return the value of field 'RGB'.
-     */
-    public java.lang.String getRGB()
-    {
-        return this._RGB;
-    } //-- java.lang.String getRGB() 
-
-    /**
-     * Method isValid
-     * 
-     * 
-     * 
-     * @return boolean
+  /**
+   * Field _min.
+   */
+  private float _min;
+
+  /**
+   * keeps track of state for field: _min
+   */
+  private boolean _has_min;
+
+  /**
+   * Field _colourByLabel.
+   */
+  private boolean _colourByLabel;
+
+  /**
+   * keeps track of state for field: _colourByLabel
+   */
+  private boolean _has_colourByLabel;
+
+  /**
+   * Field _autoScale.
+   */
+  private boolean _autoScale;
+
+  /**
+   * keeps track of state for field: _autoScale
+   */
+  private boolean _has_autoScale;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public Colour()
+  {
+    super();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
      */
-    public boolean isValid()
-    {
-        try {
-            validate();
-        }
-        catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    } //-- boolean isValid() 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param out
+  public void deleteAutoScale()
+  {
+    this._has_autoScale = false;
+  }
+
+  /**
      */
-    public void marshal(java.io.Writer out)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, out);
-    } //-- void marshal(java.io.Writer) 
-
-    /**
-     * Method marshal
-     * 
-     * 
-     * 
-     * @param handler
+  public void deleteColourByLabel()
+  {
+    this._has_colourByLabel = false;
+  }
+
+  /**
      */
-    public void marshal(org.xml.sax.ContentHandler handler)
-        throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
-    {
-        
-        Marshaller.marshal(this, handler);
-    } //-- void marshal(org.xml.sax.ContentHandler) 
-
-    /**
-     * Sets the value of field 'name'.
-     * 
-     * @param name the value of field 'name'.
+  public void deleteMax()
+  {
+    this._has_max = false;
+  }
+
+  /**
      */
-    public void setName(java.lang.String name)
-    {
-        this._name = name;
-    } //-- void setName(java.lang.String) 
+  public void deleteMin()
+  {
+    this._has_min = false;
+  }
 
-    /**
-     * Sets the value of field 'RGB'.
-     * 
-     * @param RGB the value of field 'RGB'.
+  /**
      */
-    public void setRGB(java.lang.String RGB)
+  public void deleteThreshold()
+  {
+    this._has_threshold = false;
+  }
+
+  /**
+   * Returns the value of field 'autoScale'.
+   * 
+   * @return the value of field 'AutoScale'.
+   */
+  public boolean getAutoScale()
+  {
+    return this._autoScale;
+  }
+
+  /**
+   * Returns the value of field 'colourByLabel'.
+   * 
+   * @return the value of field 'ColourByLabel'.
+   */
+  public boolean getColourByLabel()
+  {
+    return this._colourByLabel;
+  }
+
+  /**
+   * Returns the value of field 'max'.
+   * 
+   * @return the value of field 'Max'.
+   */
+  public float getMax()
+  {
+    return this._max;
+  }
+
+  /**
+   * Returns the value of field 'min'.
+   * 
+   * @return the value of field 'Min'.
+   */
+  public float getMin()
+  {
+    return this._min;
+  }
+
+  /**
+   * Returns the value of field 'minRGB'.
+   * 
+   * @return the value of field 'MinRGB'.
+   */
+  public java.lang.String getMinRGB()
+  {
+    return this._minRGB;
+  }
+
+  /**
+   * Returns the value of field 'name'.
+   * 
+   * @return the value of field 'Name'.
+   */
+  public java.lang.String getName()
+  {
+    return this._name;
+  }
+
+  /**
+   * Returns the value of field 'RGB'.
+   * 
+   * @return the value of field 'RGB'.
+   */
+  public java.lang.String getRGB()
+  {
+    return this._RGB;
+  }
+
+  /**
+   * Returns the value of field 'threshType'. The field 'threshType' has the
+   * following description: loosely specified enumeration: NONE,ABOVE, or BELOW
+   * 
+   * @return the value of field 'ThreshType'.
+   */
+  public java.lang.String getThreshType()
+  {
+    return this._threshType;
+  }
+
+  /**
+   * Returns the value of field 'threshold'.
+   * 
+   * @return the value of field 'Threshold'.
+   */
+  public float getThreshold()
+  {
+    return this._threshold;
+  }
+
+  /**
+   * Method hasAutoScale.
+   * 
+   * @return true if at least one AutoScale has been added
+   */
+  public boolean hasAutoScale()
+  {
+    return this._has_autoScale;
+  }
+
+  /**
+   * Method hasColourByLabel.
+   * 
+   * @return true if at least one ColourByLabel has been added
+   */
+  public boolean hasColourByLabel()
+  {
+    return this._has_colourByLabel;
+  }
+
+  /**
+   * Method hasMax.
+   * 
+   * @return true if at least one Max has been added
+   */
+  public boolean hasMax()
+  {
+    return this._has_max;
+  }
+
+  /**
+   * Method hasMin.
+   * 
+   * @return true if at least one Min has been added
+   */
+  public boolean hasMin()
+  {
+    return this._has_min;
+  }
+
+  /**
+   * Method hasThreshold.
+   * 
+   * @return true if at least one Threshold has been added
+   */
+  public boolean hasThreshold()
+  {
+    return this._has_threshold;
+  }
+
+  /**
+   * Returns the value of field 'autoScale'.
+   * 
+   * @return the value of field 'AutoScale'.
+   */
+  public boolean isAutoScale()
+  {
+    return this._autoScale;
+  }
+
+  /**
+   * Returns the value of field 'colourByLabel'.
+   * 
+   * @return the value of field 'ColourByLabel'.
+   */
+  public boolean isColourByLabel()
+  {
+    return this._colourByLabel;
+  }
+
+  /**
+   * Method isValid.
+   * 
+   * @return true if this object is valid according to the schema
+   */
+  public boolean isValid()
+  {
+    try
     {
-        this._RGB = RGB;
-    } //-- void setRGB(java.lang.String) 
-
-    /**
-     * Method unmarshal
-     * 
-     * 
-     * 
-     * @param reader
-     * @return Object
-     */
-    public static java.lang.Object unmarshal(java.io.Reader reader)
-        throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
+      validate();
+    } catch (org.exolab.castor.xml.ValidationException vex)
     {
-        return (jalview.schemabinding.version2.Colour) Unmarshaller.unmarshal(jalview.schemabinding.version2.Colour.class, reader);
-    } //-- java.lang.Object unmarshal(java.io.Reader) 
+      return false;
+    }
+    return true;
+  }
 
-    /**
-     * Method validate
-     * 
-     */
-    public void validate()
-        throws org.exolab.castor.xml.ValidationException
-    {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    } //-- void validate() 
+  /**
+   * 
+   * 
+   * @param out
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void marshal(final java.io.Writer out)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, out);
+  }
+
+  /**
+   * 
+   * 
+   * @param handler
+   * @throws java.io.IOException
+   *           if an IOException occurs during marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   */
+  public void marshal(final org.xml.sax.ContentHandler handler)
+          throws java.io.IOException,
+          org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, handler);
+  }
+
+  /**
+   * Sets the value of field 'autoScale'.
+   * 
+   * @param autoScale
+   *          the value of field 'autoScale'.
+   */
+  public void setAutoScale(final boolean autoScale)
+  {
+    this._autoScale = autoScale;
+    this._has_autoScale = true;
+  }
+
+  /**
+   * Sets the value of field 'colourByLabel'.
+   * 
+   * @param colourByLabel
+   *          the value of field 'colourByLabel'.
+   */
+  public void setColourByLabel(final boolean colourByLabel)
+  {
+    this._colourByLabel = colourByLabel;
+    this._has_colourByLabel = true;
+  }
+
+  /**
+   * Sets the value of field 'max'.
+   * 
+   * @param max
+   *          the value of field 'max'.
+   */
+  public void setMax(final float max)
+  {
+    this._max = max;
+    this._has_max = true;
+  }
+
+  /**
+   * Sets the value of field 'min'.
+   * 
+   * @param min
+   *          the value of field 'min'.
+   */
+  public void setMin(final float min)
+  {
+    this._min = min;
+    this._has_min = true;
+  }
+
+  /**
+   * Sets the value of field 'minRGB'.
+   * 
+   * @param minRGB
+   *          the value of field 'minRGB'.
+   */
+  public void setMinRGB(final java.lang.String minRGB)
+  {
+    this._minRGB = minRGB;
+  }
+
+  /**
+   * Sets the value of field 'name'.
+   * 
+   * @param name
+   *          the value of field 'name'.
+   */
+  public void setName(final java.lang.String name)
+  {
+    this._name = name;
+  }
+
+  /**
+   * Sets the value of field 'RGB'.
+   * 
+   * @param RGB
+   *          the value of field 'RGB'.
+   */
+  public void setRGB(final java.lang.String RGB)
+  {
+    this._RGB = RGB;
+  }
+
+  /**
+   * Sets the value of field 'threshType'. The field 'threshType' has the
+   * following description: loosely specified enumeration: NONE,ABOVE, or BELOW
+   * 
+   * @param threshType
+   *          the value of field 'threshType'.
+   */
+  public void setThreshType(final java.lang.String threshType)
+  {
+    this._threshType = threshType;
+  }
+
+  /**
+   * Sets the value of field 'threshold'.
+   * 
+   * @param threshold
+   *          the value of field 'threshold'.
+   */
+  public void setThreshold(final float threshold)
+  {
+    this._threshold = threshold;
+    this._has_threshold = true;
+  }
+
+  /**
+   * Method unmarshal.
+   * 
+   * @param reader
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @return the unmarshaled jalview.schemabinding.version2.Colour
+   */
+  public static jalview.schemabinding.version2.Colour unmarshal(
+          final java.io.Reader reader)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.schemabinding.version2.Colour) Unmarshaller.unmarshal(
+            jalview.schemabinding.version2.Colour.class, reader);
+  }
+
+  /**
+   * 
+   * 
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void validate() throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+    validator.validate(this);
+  }
 
 }