X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FDBRef.java;h=155d1624fe946a9c831a0e8e4d16bf1ad41bba5a;hb=153dd62dc91da13ae732600e6ea55ddbe15eab39;hp=7c98b4e5de02ff15f2b5be17519c070ad91bfe5c;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git diff --git a/src/jalview/schemabinding/version2/DBRef.java b/src/jalview/schemabinding/version2/DBRef.java index 7c98b4e..155d162 100644 --- a/src/jalview/schemabinding/version2/DBRef.java +++ b/src/jalview/schemabinding/version2/DBRef.java @@ -1,198 +1,243 @@ /* - * This class was automatically generated with - * Castor 0.9.6, using an XML - * Schema. - * $Id$ + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) + * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . */ - package jalview.schemabinding.version2; //---------------------------------/ //- Imported classes and packages -/ //---------------------------------/ -import org.exolab.castor.xml.*; +import org.exolab.castor.xml.Marshaller; +import org.exolab.castor.xml.Unmarshaller; /** * Class DBRef. - * + * * @version $Revision$ $Date$ */ -public class DBRef - implements java.io.Serializable +public class DBRef implements java.io.Serializable { - //--------------------------/ - //- Class/Member Variables -/ - //--------------------------/ + // --------------------------/ + // - Class/Member Variables -/ + // --------------------------/ /** - * Field _source + * Field _source. */ private java.lang.String _source; /** - * Field _version + * Field _version. */ private java.lang.String _version; /** - * Field _accessionId + * Field _accessionId. */ private java.lang.String _accessionId; - //----------------/ - //- Constructors -/ - //----------------/ + /** + * Field _mapping. + */ + private jalview.schemabinding.version2.Mapping _mapping; + + // ----------------/ + // - Constructors -/ + // ----------------/ public DBRef() { super(); - } //-- jalview.schemabinding.version2.DBRef() + } - //-----------/ - //- Methods -/ - //-----------/ + // -----------/ + // - Methods -/ + // -----------/ /** * Returns the value of field 'accessionId'. - * - * @return String - * @return the value of field 'accessionId'. + * + * @return the value of field 'AccessionId'. */ public java.lang.String getAccessionId() { return this._accessionId; - } //-- java.lang.String getAccessionId() + } + + /** + * Returns the value of field 'mapping'. + * + * @return the value of field 'Mapping'. + */ + public jalview.schemabinding.version2.Mapping getMapping() + { + return this._mapping; + } /** * Returns the value of field 'source'. - * - * @return String - * @return the value of field 'source'. + * + * @return the value of field 'Source'. */ public java.lang.String getSource() { return this._source; - } //-- java.lang.String getSource() + } /** * Returns the value of field 'version'. - * - * @return String - * @return the value of field 'version'. + * + * @return the value of field 'Version'. */ public java.lang.String getVersion() { return this._version; - } //-- java.lang.String getVersion() + } /** - * Method isValid - * - * - * - * @return boolean + * Method isValid. + * + * @return true if this object is valid according to the schema */ public boolean isValid() { try { validate(); - } - catch (org.exolab.castor.xml.ValidationException vex) + } catch (org.exolab.castor.xml.ValidationException vex) { return false; } return true; - } //-- boolean isValid() + } /** - * Method marshal - * - * - * + * + * * @param out + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema */ - public void marshal(java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException + public void marshal(final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, out); - } //-- void marshal(java.io.Writer) + } /** - * Method marshal - * - * - * + * + * * @param handler + * @throws java.io.IOException + * if an IOException occurs during marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling */ - public void marshal(org.xml.sax.ContentHandler handler) - throws java.io.IOException, org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException + public void marshal(final org.xml.sax.ContentHandler handler) + throws java.io.IOException, + org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException { - Marshaller.marshal(this, handler); - } //-- void marshal(org.xml.sax.ContentHandler) + } /** * Sets the value of field 'accessionId'. - * - * @param accessionId the value of field 'accessionId'. + * + * @param accessionId + * the value of field 'accessionId'. */ - public void setAccessionId(java.lang.String accessionId) + public void setAccessionId(final java.lang.String accessionId) { this._accessionId = accessionId; - } //-- void setAccessionId(java.lang.String) + } + + /** + * Sets the value of field 'mapping'. + * + * @param mapping + * the value of field 'mapping'. + */ + public void setMapping( + final jalview.schemabinding.version2.Mapping mapping) + { + this._mapping = mapping; + } /** * Sets the value of field 'source'. - * - * @param source the value of field 'source'. + * + * @param source + * the value of field 'source'. */ - public void setSource(java.lang.String source) + public void setSource(final java.lang.String source) { this._source = source; - } //-- void setSource(java.lang.String) + } /** * Sets the value of field 'version'. - * - * @param version the value of field 'version'. + * + * @param version + * the value of field 'version'. */ - public void setVersion(java.lang.String version) + public void setVersion(final java.lang.String version) { this._version = version; - } //-- void setVersion(java.lang.String) + } /** - * Method unmarshal - * - * - * + * Method unmarshal. + * * @param reader - * @return Object + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + * @return the unmarshaled jalview.schemabinding.version2.DBRef */ - public static java.lang.Object unmarshal(java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException + public static jalview.schemabinding.version2.DBRef unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException { return (jalview.schemabinding.version2.DBRef) Unmarshaller.unmarshal( - jalview.schemabinding.version2.DBRef.class, reader); - } //-- java.lang.Object unmarshal(java.io.Reader) + jalview.schemabinding.version2.DBRef.class, reader); + } /** - * Method validate - * + * + * + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema */ - public void validate() - throws org.exolab.castor.xml.ValidationException + public void validate() throws org.exolab.castor.xml.ValidationException { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml. - Validator(); + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); validator.validate(this); - } //-- void validate() + } }