X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FDBRef.java;h=b93ca1f5f55a86b7a6829f211bc97af2cb0d5a94;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=7c98b4e5de02ff15f2b5be17519c070ad91bfe5c;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/DBRef.java b/src/jalview/schemabinding/version2/DBRef.java
index 7c98b4e..b93ca1f 100644
--- a/src/jalview/schemabinding/version2/DBRef.java
+++ b/src/jalview/schemabinding/version2/DBRef.java
@@ -1,198 +1,236 @@
-/*
- * This class was automatically generated with
- * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
-//---------------------------------/
-//- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.*;
-
-/**
- * Class DBRef.
- *
- * @version $Revision$ $Date$
- */
-public class DBRef
-    implements java.io.Serializable
-{
-
-  //--------------------------/
-  //- Class/Member Variables -/
-  //--------------------------/
-
-  /**
-   * Field _source
-   */
-  private java.lang.String _source;
-
-  /**
-   * Field _version
-   */
-  private java.lang.String _version;
-
-  /**
-   * Field _accessionId
-   */
-  private java.lang.String _accessionId;
-
-  //----------------/
-  //- Constructors -/
-  //----------------/
-
-  public DBRef()
-  {
-    super();
-  } //-- jalview.schemabinding.version2.DBRef()
-
-  //-----------/
-  //- Methods -/
-  //-----------/
-
-  /**
-   * Returns the value of field 'accessionId'.
-   *
-   * @return String
-   * @return the value of field 'accessionId'.
-   */
-  public java.lang.String getAccessionId()
-  {
-    return this._accessionId;
-  } //-- java.lang.String getAccessionId()
-
-  /**
-   * Returns the value of field 'source'.
-   *
-   * @return String
-   * @return the value of field 'source'.
-   */
-  public java.lang.String getSource()
-  {
-    return this._source;
-  } //-- java.lang.String getSource()
-
-  /**
-   * Returns the value of field 'version'.
-   *
-   * @return String
-   * @return the value of field 'version'.
-   */
-  public java.lang.String getVersion()
-  {
-    return this._version;
-  } //-- java.lang.String getVersion()
-
-  /**
-   * Method isValid
-   *
-   *
-   *
-   * @return boolean
-   */
-  public boolean isValid()
-  {
-    try
-    {
-      validate();
-    }
-    catch (org.exolab.castor.xml.ValidationException vex)
-    {
-      return false;
-    }
-    return true;
-  } //-- boolean isValid()
-
-  /**
-   * Method marshal
-   *
-   *
-   *
-   * @param out
-   */
-  public void marshal(java.io.Writer out)
-      throws org.exolab.castor.xml.MarshalException,
-      org.exolab.castor.xml.ValidationException
-  {
-
-    Marshaller.marshal(this, out);
-  } //-- void marshal(java.io.Writer)
-
-  /**
-   * Method marshal
-   *
-   *
-   *
-   * @param handler
-   */
-  public void marshal(org.xml.sax.ContentHandler handler)
-      throws java.io.IOException, org.exolab.castor.xml.MarshalException,
-      org.exolab.castor.xml.ValidationException
-  {
-
-    Marshaller.marshal(this, handler);
-  } //-- void marshal(org.xml.sax.ContentHandler)
-
-  /**
-   * Sets the value of field 'accessionId'.
-   *
-   * @param accessionId the value of field 'accessionId'.
-   */
-  public void setAccessionId(java.lang.String accessionId)
-  {
-    this._accessionId = accessionId;
-  } //-- void setAccessionId(java.lang.String)
-
-  /**
-   * Sets the value of field 'source'.
-   *
-   * @param source the value of field 'source'.
-   */
-  public void setSource(java.lang.String source)
-  {
-    this._source = source;
-  } //-- void setSource(java.lang.String)
-
-  /**
-   * Sets the value of field 'version'.
-   *
-   * @param version the value of field 'version'.
-   */
-  public void setVersion(java.lang.String version)
-  {
-    this._version = version;
-  } //-- void setVersion(java.lang.String)
-
-  /**
-   * Method unmarshal
-   *
-   *
-   *
-   * @param reader
-   * @return Object
-   */
-  public static java.lang.Object unmarshal(java.io.Reader reader)
-      throws org.exolab.castor.xml.MarshalException,
-      org.exolab.castor.xml.ValidationException
-  {
-    return (jalview.schemabinding.version2.DBRef) Unmarshaller.unmarshal(
-        jalview.schemabinding.version2.DBRef.class, reader);
-  } //-- java.lang.Object unmarshal(java.io.Reader)
-
-  /**
-   * Method validate
-   *
-   */
-  public void validate()
-      throws org.exolab.castor.xml.ValidationException
-  {
-    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.
-        Validator();
-    validator.validate(this);
-  } //-- void validate()
-
-}
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ *******************************************************************************/
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+  //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class DBRef.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class DBRef implements java.io.Serializable {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field _source.
+     */
+    private java.lang.String _source;
+
+    /**
+     * Field _version.
+     */
+    private java.lang.String _version;
+
+    /**
+     * Field _accessionId.
+     */
+    private java.lang.String _accessionId;
+
+    /**
+     * Field _mapping.
+     */
+    private jalview.schemabinding.version2.Mapping _mapping;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public DBRef() {
+        super();
+    }
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     * Returns the value of field 'accessionId'.
+     * 
+     * @return the value of field 'AccessionId'.
+     */
+    public java.lang.String getAccessionId(
+    ) {
+        return this._accessionId;
+    }
+
+    /**
+     * Returns the value of field 'mapping'.
+     * 
+     * @return the value of field 'Mapping'.
+     */
+    public jalview.schemabinding.version2.Mapping getMapping(
+    ) {
+        return this._mapping;
+    }
+
+    /**
+     * Returns the value of field 'source'.
+     * 
+     * @return the value of field 'Source'.
+     */
+    public java.lang.String getSource(
+    ) {
+        return this._source;
+    }
+
+    /**
+     * Returns the value of field 'version'.
+     * 
+     * @return the value of field 'Version'.
+     */
+    public java.lang.String getVersion(
+    ) {
+        return this._version;
+    }
+
+    /**
+     * Method isValid.
+     * 
+     * @return true if this object is valid according to the schema
+     */
+    public boolean isValid(
+    ) {
+        try {
+            validate();
+        } catch (org.exolab.castor.xml.ValidationException vex) {
+            return false;
+        }
+        return true;
+    }
+
+    /**
+     * 
+     * 
+     * @param out
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void marshal(
+            final java.io.Writer out)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, out);
+    }
+
+    /**
+     * 
+     * 
+     * @param handler
+     * @throws java.io.IOException if an IOException occurs during
+     * marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     */
+    public void marshal(
+            final org.xml.sax.ContentHandler handler)
+    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, handler);
+    }
+
+    /**
+     * Sets the value of field 'accessionId'.
+     * 
+     * @param accessionId the value of field 'accessionId'.
+     */
+    public void setAccessionId(
+            final java.lang.String accessionId) {
+        this._accessionId = accessionId;
+    }
+
+    /**
+     * Sets the value of field 'mapping'.
+     * 
+     * @param mapping the value of field 'mapping'.
+     */
+    public void setMapping(
+            final jalview.schemabinding.version2.Mapping mapping) {
+        this._mapping = mapping;
+    }
+
+    /**
+     * Sets the value of field 'source'.
+     * 
+     * @param source the value of field 'source'.
+     */
+    public void setSource(
+            final java.lang.String source) {
+        this._source = source;
+    }
+
+    /**
+     * Sets the value of field 'version'.
+     * 
+     * @param version the value of field 'version'.
+     */
+    public void setVersion(
+            final java.lang.String version) {
+        this._version = version;
+    }
+
+    /**
+     * Method unmarshal.
+     * 
+     * @param reader
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @return the unmarshaled jalview.schemabinding.version2.DBRef
+     */
+    public static jalview.schemabinding.version2.DBRef unmarshal(
+            final java.io.Reader reader)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        return (jalview.schemabinding.version2.DBRef) Unmarshaller.unmarshal(jalview.schemabinding.version2.DBRef.class, reader);
+    }
+
+    /**
+     * 
+     * 
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void validate(
+    )
+    throws org.exolab.castor.xml.ValidationException {
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+        validator.validate(this);
+    }
+
+}