X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FDBRef.java;h=ea968acdb3fa89b870c995bf33ee2f927db67817;hb=46ca91c8b2a49f1d2f80b6823ade9f1c29c4121c;hp=7c98b4e5de02ff15f2b5be17519c070ad91bfe5c;hpb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;p=jalview.git
diff --git a/src/jalview/schemabinding/version2/DBRef.java b/src/jalview/schemabinding/version2/DBRef.java
index 7c98b4e..ea968ac 100644
--- a/src/jalview/schemabinding/version2/DBRef.java
+++ b/src/jalview/schemabinding/version2/DBRef.java
@@ -1,198 +1,243 @@
/*
- * This class was automatically generated with
- * Castor 0.9.6, using an XML
- * Schema.
- * $Id$
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
+ * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
*/
-
package jalview.schemabinding.version2;
//---------------------------------/
//- Imported classes and packages -/
//---------------------------------/
-import org.exolab.castor.xml.*;
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
/**
* Class DBRef.
- *
+ *
* @version $Revision$ $Date$
*/
-public class DBRef
- implements java.io.Serializable
+public class DBRef implements java.io.Serializable
{
- //--------------------------/
- //- Class/Member Variables -/
- //--------------------------/
+ // --------------------------/
+ // - Class/Member Variables -/
+ // --------------------------/
/**
- * Field _source
+ * Field _source.
*/
private java.lang.String _source;
/**
- * Field _version
+ * Field _version.
*/
private java.lang.String _version;
/**
- * Field _accessionId
+ * Field _accessionId.
*/
private java.lang.String _accessionId;
- //----------------/
- //- Constructors -/
- //----------------/
+ /**
+ * Field _mapping.
+ */
+ private jalview.schemabinding.version2.Mapping _mapping;
+
+ // ----------------/
+ // - Constructors -/
+ // ----------------/
public DBRef()
{
super();
- } //-- jalview.schemabinding.version2.DBRef()
+ }
- //-----------/
- //- Methods -/
- //-----------/
+ // -----------/
+ // - Methods -/
+ // -----------/
/**
* Returns the value of field 'accessionId'.
- *
- * @return String
- * @return the value of field 'accessionId'.
+ *
+ * @return the value of field 'AccessionId'.
*/
public java.lang.String getAccessionId()
{
return this._accessionId;
- } //-- java.lang.String getAccessionId()
+ }
+
+ /**
+ * Returns the value of field 'mapping'.
+ *
+ * @return the value of field 'Mapping'.
+ */
+ public jalview.schemabinding.version2.Mapping getMapping()
+ {
+ return this._mapping;
+ }
/**
* Returns the value of field 'source'.
- *
- * @return String
- * @return the value of field 'source'.
+ *
+ * @return the value of field 'Source'.
*/
public java.lang.String getSource()
{
return this._source;
- } //-- java.lang.String getSource()
+ }
/**
* Returns the value of field 'version'.
- *
- * @return String
- * @return the value of field 'version'.
+ *
+ * @return the value of field 'Version'.
*/
public java.lang.String getVersion()
{
return this._version;
- } //-- java.lang.String getVersion()
+ }
/**
- * Method isValid
- *
- *
- *
- * @return boolean
+ * Method isValid.
+ *
+ * @return true if this object is valid according to the schema
*/
public boolean isValid()
{
try
{
validate();
- }
- catch (org.exolab.castor.xml.ValidationException vex)
+ } catch (org.exolab.castor.xml.ValidationException vex)
{
return false;
}
return true;
- } //-- boolean isValid()
+ }
/**
- * Method marshal
- *
- *
- *
+ *
+ *
* @param out
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
*/
- public void marshal(java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
+ public void marshal(final java.io.Writer out)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
{
-
Marshaller.marshal(this, out);
- } //-- void marshal(java.io.Writer)
+ }
/**
- * Method marshal
- *
- *
- *
+ *
+ *
* @param handler
+ * @throws java.io.IOException
+ * if an IOException occurs during marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
*/
- public void marshal(org.xml.sax.ContentHandler handler)
- throws java.io.IOException, org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
+ public void marshal(final org.xml.sax.ContentHandler handler)
+ throws java.io.IOException,
+ org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
{
-
Marshaller.marshal(this, handler);
- } //-- void marshal(org.xml.sax.ContentHandler)
+ }
/**
* Sets the value of field 'accessionId'.
- *
- * @param accessionId the value of field 'accessionId'.
+ *
+ * @param accessionId
+ * the value of field 'accessionId'.
*/
- public void setAccessionId(java.lang.String accessionId)
+ public void setAccessionId(final java.lang.String accessionId)
{
this._accessionId = accessionId;
- } //-- void setAccessionId(java.lang.String)
+ }
+
+ /**
+ * Sets the value of field 'mapping'.
+ *
+ * @param mapping
+ * the value of field 'mapping'.
+ */
+ public void setMapping(
+ final jalview.schemabinding.version2.Mapping mapping)
+ {
+ this._mapping = mapping;
+ }
/**
* Sets the value of field 'source'.
- *
- * @param source the value of field 'source'.
+ *
+ * @param source
+ * the value of field 'source'.
*/
- public void setSource(java.lang.String source)
+ public void setSource(final java.lang.String source)
{
this._source = source;
- } //-- void setSource(java.lang.String)
+ }
/**
* Sets the value of field 'version'.
- *
- * @param version the value of field 'version'.
+ *
+ * @param version
+ * the value of field 'version'.
*/
- public void setVersion(java.lang.String version)
+ public void setVersion(final java.lang.String version)
{
this._version = version;
- } //-- void setVersion(java.lang.String)
+ }
/**
- * Method unmarshal
- *
- *
- *
+ * Method unmarshal.
+ *
* @param reader
- * @return Object
+ * @throws org.exolab.castor.xml.MarshalException
+ * if object is null or if any SAXException is thrown during
+ * marshaling
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
+ * @return the unmarshaled jalview.schemabinding.version2.DBRef
*/
- public static java.lang.Object unmarshal(java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
+ public static jalview.schemabinding.version2.DBRef unmarshal(
+ final java.io.Reader reader)
+ throws org.exolab.castor.xml.MarshalException,
+ org.exolab.castor.xml.ValidationException
{
return (jalview.schemabinding.version2.DBRef) Unmarshaller.unmarshal(
- jalview.schemabinding.version2.DBRef.class, reader);
- } //-- java.lang.Object unmarshal(java.io.Reader)
+ jalview.schemabinding.version2.DBRef.class, reader);
+ }
/**
- * Method validate
- *
+ *
+ *
+ * @throws org.exolab.castor.xml.ValidationException
+ * if this object is an invalid instance according to the schema
*/
- public void validate()
- throws org.exolab.castor.xml.ValidationException
+ public void validate() throws org.exolab.castor.xml.ValidationException
{
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.
- Validator();
+ org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
validator.validate(this);
- } //-- void validate()
+ }
}