X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FDoubleMatrix.java;fp=src%2Fjalview%2Fschemabinding%2Fversion2%2FDoubleMatrix.java;h=0000000000000000000000000000000000000000;hb=ca8504cf9d10874dce9f07cf7a9d933853fe0dd0;hp=04aed991d15b61cb1114fe465674fc87d4846a9e;hpb=775e7bc104584e88dddcea73fbf02c66f5200c16;p=jalview.git diff --git a/src/jalview/schemabinding/version2/DoubleMatrix.java b/src/jalview/schemabinding/version2/DoubleMatrix.java deleted file mode 100644 index 04aed99..0000000 --- a/src/jalview/schemabinding/version2/DoubleMatrix.java +++ /dev/null @@ -1,440 +0,0 @@ -/* - * This class was automatically generated with - * Castor 1.1, using an XML - * Schema. - * $Id$ - */ - -package jalview.schemabinding.version2; - -//---------------------------------/ -//- Imported classes and packages -/ -//---------------------------------/ - -import org.exolab.castor.xml.Marshaller; -import org.exolab.castor.xml.Unmarshaller; - -/** - * Class DoubleMatrix. - * - * @version $Revision$ $Date$ - */ -public class DoubleMatrix implements java.io.Serializable -{ - - // --------------------------/ - // - Class/Member Variables -/ - // --------------------------/ - - /** - * Field _rows. - */ - private int _rows; - - /** - * keeps track of state for field: _rows - */ - private boolean _has_rows; - - /** - * Field _columns. - */ - private int _columns; - - /** - * keeps track of state for field: _columns - */ - private boolean _has_columns; - - /** - * Field _rowList. - */ - private java.util.Vector _rowList; - - /** - * Field _d. - */ - private jalview.schemabinding.version2.D _d; - - /** - * Field _e. - */ - private jalview.schemabinding.version2.E _e; - - // ----------------/ - // - Constructors -/ - // ----------------/ - - public DoubleMatrix() - { - super(); - this._rowList = new java.util.Vector(); - } - - // -----------/ - // - Methods -/ - // -----------/ - - /** - * - * - * @param vRow - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - */ - public void addRow(final jalview.schemabinding.version2.Row vRow) - throws java.lang.IndexOutOfBoundsException - { - this._rowList.addElement(vRow); - } - - /** - * - * - * @param index - * @param vRow - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - */ - public void addRow(final int index, - final jalview.schemabinding.version2.Row vRow) - throws java.lang.IndexOutOfBoundsException - { - this._rowList.add(index, vRow); - } - - /** - */ - public void deleteColumns() - { - this._has_columns = false; - } - - /** - */ - public void deleteRows() - { - this._has_rows = false; - } - - /** - * Method enumerateRow. - * - * @return an Enumeration over all jalview.schemabinding.version2.Row elements - */ - public java.util.Enumeration enumerateRow() - { - return this._rowList.elements(); - } - - /** - * Returns the value of field 'columns'. - * - * @return the value of field 'Columns'. - */ - public int getColumns() - { - return this._columns; - } - - /** - * Returns the value of field 'd'. - * - * @return the value of field 'D'. - */ - public jalview.schemabinding.version2.D getD() - { - return this._d; - } - - /** - * Returns the value of field 'e'. - * - * @return the value of field 'E'. - */ - public jalview.schemabinding.version2.E getE() - { - return this._e; - } - - /** - * Method getRow. - * - * @param index - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - * @return the value of the jalview.schemabinding.version2.Row at the given - * index - */ - public jalview.schemabinding.version2.Row getRow(final int index) - throws java.lang.IndexOutOfBoundsException - { - // check bounds for index - if (index < 0 || index >= this._rowList.size()) - { - throw new IndexOutOfBoundsException("getRow: Index value '" + index - + "' not in range [0.." + (this._rowList.size() - 1) + "]"); - } - - return (jalview.schemabinding.version2.Row) _rowList.get(index); - } - - /** - * Method getRow.Returns the contents of the collection in an Array. - *

- * Note: Just in case the collection contents are changing in another thread, - * we pass a 0-length Array of the correct type into the API call. This way we - * know that the Array returned is of exactly the correct length. - * - * @return this collection as an Array - */ - public jalview.schemabinding.version2.Row[] getRow() - { - jalview.schemabinding.version2.Row[] array = new jalview.schemabinding.version2.Row[0]; - return (jalview.schemabinding.version2.Row[]) this._rowList - .toArray(array); - } - - /** - * Method getRowCount. - * - * @return the size of this collection - */ - public int getRowCount() - { - return this._rowList.size(); - } - - /** - * Returns the value of field 'rows'. - * - * @return the value of field 'Rows'. - */ - public int getRows() - { - return this._rows; - } - - /** - * Method hasColumns. - * - * @return true if at least one Columns has been added - */ - public boolean hasColumns() - { - return this._has_columns; - } - - /** - * Method hasRows. - * - * @return true if at least one Rows has been added - */ - public boolean hasRows() - { - return this._has_rows; - } - - /** - * Method isValid. - * - * @return true if this object is valid according to the schema - */ - public boolean isValid() - { - try - { - validate(); - } catch (org.exolab.castor.xml.ValidationException vex) - { - return false; - } - return true; - } - - /** - * - * - * @param out - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - */ - public void marshal(final java.io.Writer out) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - Marshaller.marshal(this, out); - } - - /** - * - * - * @param handler - * @throws java.io.IOException - * if an IOException occurs during marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - */ - public void marshal(final org.xml.sax.ContentHandler handler) - throws java.io.IOException, - org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - Marshaller.marshal(this, handler); - } - - /** - */ - public void removeAllRow() - { - this._rowList.clear(); - } - - /** - * Method removeRow. - * - * @param vRow - * @return true if the object was removed from the collection. - */ - public boolean removeRow(final jalview.schemabinding.version2.Row vRow) - { - boolean removed = _rowList.remove(vRow); - return removed; - } - - /** - * Method removeRowAt. - * - * @param index - * @return the element removed from the collection - */ - public jalview.schemabinding.version2.Row removeRowAt(final int index) - { - java.lang.Object obj = this._rowList.remove(index); - return (jalview.schemabinding.version2.Row) obj; - } - - /** - * Sets the value of field 'columns'. - * - * @param columns - * the value of field 'columns'. - */ - public void setColumns(final int columns) - { - this._columns = columns; - this._has_columns = true; - } - - /** - * Sets the value of field 'd'. - * - * @param d - * the value of field 'd'. - */ - public void setD(final jalview.schemabinding.version2.D d) - { - this._d = d; - } - - /** - * Sets the value of field 'e'. - * - * @param e - * the value of field 'e'. - */ - public void setE(final jalview.schemabinding.version2.E e) - { - this._e = e; - } - - /** - * - * - * @param index - * @param vRow - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - */ - public void setRow(final int index, - final jalview.schemabinding.version2.Row vRow) - throws java.lang.IndexOutOfBoundsException - { - // check bounds for index - if (index < 0 || index >= this._rowList.size()) - { - throw new IndexOutOfBoundsException("setRow: Index value '" + index - + "' not in range [0.." + (this._rowList.size() - 1) + "]"); - } - - this._rowList.set(index, vRow); - } - - /** - * - * - * @param vRowArray - */ - public void setRow(final jalview.schemabinding.version2.Row[] vRowArray) - { - // -- copy array - _rowList.clear(); - - for (int i = 0; i < vRowArray.length; i++) - { - this._rowList.add(vRowArray[i]); - } - } - - /** - * Sets the value of field 'rows'. - * - * @param rows - * the value of field 'rows'. - */ - public void setRows(final int rows) - { - this._rows = rows; - this._has_rows = true; - } - - /** - * Method unmarshal. - * - * @param reader - * @throws org.exolab.castor.xml.MarshalException - * if object is null or if any SAXException is thrown during - * marshaling - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - * @return the unmarshaled jalview.schemabinding.version2.DoubleMatrix - */ - public static jalview.schemabinding.version2.DoubleMatrix unmarshal( - final java.io.Reader reader) - throws org.exolab.castor.xml.MarshalException, - org.exolab.castor.xml.ValidationException - { - return (jalview.schemabinding.version2.DoubleMatrix) Unmarshaller - .unmarshal(jalview.schemabinding.version2.DoubleMatrix.class, - reader); - } - - /** - * - * - * @throws org.exolab.castor.xml.ValidationException - * if this object is an invalid instance according to the schema - */ - public void validate() throws org.exolab.castor.xml.ValidationException - { - org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); - validator.validate(this); - } - -}