- * Note: Just in case the collection contents are changing in another thread, - * we pass a 0-length Array of the correct type into the API call. This way we - * know that the Array returned is of exactly the correct length. - * - * @return this collection as an Array - */ - public jalview.schemabinding.version2.Group[] getGroup() - { - jalview.schemabinding.version2.Group[] array = new jalview.schemabinding.version2.Group[0]; - return (jalview.schemabinding.version2.Group[]) this._groupList - .toArray(array); - } - - /** - * Method getGroupCount. - * - * @return the size of this collection - */ - public int getGroupCount() - { - return this._groupList.size(); - } - - /** - * Method getSetting. - * - * @param index - * @throws java.lang.IndexOutOfBoundsException - * if the index given is outside the bounds of the collection - * @return the value of the jalview.schemabinding.version2.Setting at the - * given index - */ - public jalview.schemabinding.version2.Setting getSetting(final int index) - throws java.lang.IndexOutOfBoundsException - { - // check bounds for index - if (index < 0 || index >= this._settingList.size()) - { - throw new IndexOutOfBoundsException("getSetting: Index value '" - + index + "' not in range [0.." - + (this._settingList.size() - 1) + "]"); - } - - return (jalview.schemabinding.version2.Setting) _settingList.get(index); - } - - /** - * Method getSetting.Returns the contents of the collection in an Array. - *
- * Note: Just in case the collection contents are changing in another thread,
- * we pass a 0-length Array of the correct type into the API call. This way we
- * know that the Array returned is of exactly the correct length.
- *
- * @return this collection as an Array
- */
- public jalview.schemabinding.version2.Setting[] getSetting()
- {
- jalview.schemabinding.version2.Setting[] array = new jalview.schemabinding.version2.Setting[0];
- return (jalview.schemabinding.version2.Setting[]) this._settingList
- .toArray(array);
- }
-
- /**
- * Method getSettingCount.
- *
- * @return the size of this collection
- */
- public int getSettingCount()
- {
- return this._settingList.size();
- }
-
- /**
- * Method isValid.
- *
- * @return true if this object is valid according to the schema
- */
- public boolean isValid()
- {
- try
- {
- validate();
- } catch (org.exolab.castor.xml.ValidationException vex)
- {
- return false;
- }
- return true;
- }
-
- /**
- *
- *
- * @param out
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- */
- public void marshal(final java.io.Writer out)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- Marshaller.marshal(this, out);
- }
-
- /**
- *
- *
- * @param handler
- * @throws java.io.IOException
- * if an IOException occurs during marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- */
- public void marshal(final org.xml.sax.ContentHandler handler)
- throws java.io.IOException,
- org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- Marshaller.marshal(this, handler);
- }
-
- /**
- */
- public void removeAllGroup()
- {
- this._groupList.clear();
- }
-
- /**
- */
- public void removeAllSetting()
- {
- this._settingList.clear();
- }
-
- /**
- * Method removeGroup.
- *
- * @param vGroup
- * @return true if the object was removed from the collection.
- */
- public boolean removeGroup(
- final jalview.schemabinding.version2.Group vGroup)
- {
- boolean removed = _groupList.remove(vGroup);
- return removed;
- }
-
- /**
- * Method removeGroupAt.
- *
- * @param index
- * @return the element removed from the collection
- */
- public jalview.schemabinding.version2.Group removeGroupAt(final int index)
- {
- java.lang.Object obj = this._groupList.remove(index);
- return (jalview.schemabinding.version2.Group) obj;
- }
-
- /**
- * Method removeSetting.
- *
- * @param vSetting
- * @return true if the object was removed from the collection.
- */
- public boolean removeSetting(
- final jalview.schemabinding.version2.Setting vSetting)
- {
- boolean removed = _settingList.remove(vSetting);
- return removed;
- }
-
- /**
- * Method removeSettingAt.
- *
- * @param index
- * @return the element removed from the collection
- */
- public jalview.schemabinding.version2.Setting removeSettingAt(
- final int index)
- {
- java.lang.Object obj = this._settingList.remove(index);
- return (jalview.schemabinding.version2.Setting) obj;
- }
-
- /**
- *
- *
- * @param index
- * @param vGroup
- * @throws java.lang.IndexOutOfBoundsException
- * if the index given is outside the bounds of the collection
- */
- public void setGroup(final int index,
- final jalview.schemabinding.version2.Group vGroup)
- throws java.lang.IndexOutOfBoundsException
- {
- // check bounds for index
- if (index < 0 || index >= this._groupList.size())
- {
- throw new IndexOutOfBoundsException("setGroup: Index value '" + index
- + "' not in range [0.." + (this._groupList.size() - 1) + "]");
- }
-
- this._groupList.set(index, vGroup);
- }
-
- /**
- *
- *
- * @param vGroupArray
- */
- public void setGroup(
- final jalview.schemabinding.version2.Group[] vGroupArray)
- {
- // -- copy array
- _groupList.clear();
-
- for (int i = 0; i < vGroupArray.length; i++)
- {
- this._groupList.add(vGroupArray[i]);
- }
- }
-
- /**
- *
- *
- * @param index
- * @param vSetting
- * @throws java.lang.IndexOutOfBoundsException
- * if the index given is outside the bounds of the collection
- */
- public void setSetting(final int index,
- final jalview.schemabinding.version2.Setting vSetting)
- throws java.lang.IndexOutOfBoundsException
- {
- // check bounds for index
- if (index < 0 || index >= this._settingList.size())
- {
- throw new IndexOutOfBoundsException("setSetting: Index value '"
- + index + "' not in range [0.."
- + (this._settingList.size() - 1) + "]");
- }
-
- this._settingList.set(index, vSetting);
- }
-
- /**
- *
- *
- * @param vSettingArray
- */
- public void setSetting(
- final jalview.schemabinding.version2.Setting[] vSettingArray)
- {
- // -- copy array
- _settingList.clear();
-
- for (int i = 0; i < vSettingArray.length; i++)
- {
- this._settingList.add(vSettingArray[i]);
- }
- }
-
- /**
- * Method unmarshal.
- *
- * @param reader
- * @throws org.exolab.castor.xml.MarshalException
- * if object is null or if any SAXException is thrown during
- * marshaling
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- * @return the unmarshaled jalview.schemabinding.version2.FeatureSettings
- */
- public static jalview.schemabinding.version2.FeatureSettings unmarshal(
- final java.io.Reader reader)
- throws org.exolab.castor.xml.MarshalException,
- org.exolab.castor.xml.ValidationException
- {
- return (jalview.schemabinding.version2.FeatureSettings) Unmarshaller
- .unmarshal(
- jalview.schemabinding.version2.FeatureSettings.class,
- reader);
- }
-
- /**
- *
- *
- * @throws org.exolab.castor.xml.ValidationException
- * if this object is an invalid instance according to the schema
- */
- public void validate() throws org.exolab.castor.xml.ValidationException
- {
- org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
- validator.validate(this);
- }
-
-}
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview.
+ * If not, see
+ * Note: Just in case the collection contents are changing in another thread, + * we pass a 0-length Array of the correct type into the API call. This way we + * know that the Array returned is of exactly the correct length. + * + * @return this collection as an Array + */ + public jalview.schemabinding.version2.Group[] getGroup() + { + jalview.schemabinding.version2.Group[] array = new jalview.schemabinding.version2.Group[0]; + return (jalview.schemabinding.version2.Group[]) this._groupList + .toArray(array); + } + + /** + * Method getGroupCount. + * + * @return the size of this collection + */ + public int getGroupCount() + { + return this._groupList.size(); + } + + /** + * Method getSetting. + * + * @param index + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + * @return the value of the jalview.schemabinding.version2.Setting at the + * given index + */ + public jalview.schemabinding.version2.Setting getSetting(final int index) + throws java.lang.IndexOutOfBoundsException + { + // check bounds for index + if (index < 0 || index >= this._settingList.size()) + { + throw new IndexOutOfBoundsException("getSetting: Index value '" + + index + "' not in range [0.." + + (this._settingList.size() - 1) + "]"); + } + + return (jalview.schemabinding.version2.Setting) _settingList.get(index); + } + + /** + * Method getSetting.Returns the contents of the collection in an Array. + *
+ * Note: Just in case the collection contents are changing in another thread, + * we pass a 0-length Array of the correct type into the API call. This way we + * know that the Array returned is of exactly the correct length. + * + * @return this collection as an Array + */ + public jalview.schemabinding.version2.Setting[] getSetting() + { + jalview.schemabinding.version2.Setting[] array = new jalview.schemabinding.version2.Setting[0]; + return (jalview.schemabinding.version2.Setting[]) this._settingList + .toArray(array); + } + + /** + * Method getSettingCount. + * + * @return the size of this collection + */ + public int getSettingCount() + { + return this._settingList.size(); + } + + /** + * Method isValid. + * + * @return true if this object is valid according to the schema + */ + public boolean isValid() + { + try + { + validate(); + } catch (org.exolab.castor.xml.ValidationException vex) + { + return false; + } + return true; + } + + /** + * + * + * @param out + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + */ + public void marshal(final java.io.Writer out) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, out); + } + + /** + * + * + * @param handler + * @throws java.io.IOException + * if an IOException occurs during marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + */ + public void marshal(final org.xml.sax.ContentHandler handler) + throws java.io.IOException, + org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + Marshaller.marshal(this, handler); + } + + /** + */ + public void removeAllGroup() + { + this._groupList.clear(); + } + + /** + */ + public void removeAllSetting() + { + this._settingList.clear(); + } + + /** + * Method removeGroup. + * + * @param vGroup + * @return true if the object was removed from the collection. + */ + public boolean removeGroup( + final jalview.schemabinding.version2.Group vGroup) + { + boolean removed = _groupList.remove(vGroup); + return removed; + } + + /** + * Method removeGroupAt. + * + * @param index + * @return the element removed from the collection + */ + public jalview.schemabinding.version2.Group removeGroupAt(final int index) + { + java.lang.Object obj = this._groupList.remove(index); + return (jalview.schemabinding.version2.Group) obj; + } + + /** + * Method removeSetting. + * + * @param vSetting + * @return true if the object was removed from the collection. + */ + public boolean removeSetting( + final jalview.schemabinding.version2.Setting vSetting) + { + boolean removed = _settingList.remove(vSetting); + return removed; + } + + /** + * Method removeSettingAt. + * + * @param index + * @return the element removed from the collection + */ + public jalview.schemabinding.version2.Setting removeSettingAt( + final int index) + { + java.lang.Object obj = this._settingList.remove(index); + return (jalview.schemabinding.version2.Setting) obj; + } + + /** + * + * + * @param index + * @param vGroup + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void setGroup(final int index, + final jalview.schemabinding.version2.Group vGroup) + throws java.lang.IndexOutOfBoundsException + { + // check bounds for index + if (index < 0 || index >= this._groupList.size()) + { + throw new IndexOutOfBoundsException("setGroup: Index value '" + index + + "' not in range [0.." + (this._groupList.size() - 1) + "]"); + } + + this._groupList.set(index, vGroup); + } + + /** + * + * + * @param vGroupArray + */ + public void setGroup( + final jalview.schemabinding.version2.Group[] vGroupArray) + { + // -- copy array + _groupList.clear(); + + for (int i = 0; i < vGroupArray.length; i++) + { + this._groupList.add(vGroupArray[i]); + } + } + + /** + * + * + * @param index + * @param vSetting + * @throws java.lang.IndexOutOfBoundsException + * if the index given is outside the bounds of the collection + */ + public void setSetting(final int index, + final jalview.schemabinding.version2.Setting vSetting) + throws java.lang.IndexOutOfBoundsException + { + // check bounds for index + if (index < 0 || index >= this._settingList.size()) + { + throw new IndexOutOfBoundsException("setSetting: Index value '" + + index + "' not in range [0.." + + (this._settingList.size() - 1) + "]"); + } + + this._settingList.set(index, vSetting); + } + + /** + * + * + * @param vSettingArray + */ + public void setSetting( + final jalview.schemabinding.version2.Setting[] vSettingArray) + { + // -- copy array + _settingList.clear(); + + for (int i = 0; i < vSettingArray.length; i++) + { + this._settingList.add(vSettingArray[i]); + } + } + + /** + * Method unmarshal. + * + * @param reader + * @throws org.exolab.castor.xml.MarshalException + * if object is null or if any SAXException is thrown during + * marshaling + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + * @return the unmarshaled jalview.schemabinding.version2.FeatureSettings + */ + public static jalview.schemabinding.version2.FeatureSettings unmarshal( + final java.io.Reader reader) + throws org.exolab.castor.xml.MarshalException, + org.exolab.castor.xml.ValidationException + { + return (jalview.schemabinding.version2.FeatureSettings) Unmarshaller + .unmarshal( + jalview.schemabinding.version2.FeatureSettings.class, + reader); + } + + /** + * + * + * @throws org.exolab.castor.xml.ValidationException + * if this object is an invalid instance according to the schema + */ + public void validate() throws org.exolab.castor.xml.ValidationException + { + org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator(); + validator.validate(this); + } + +}