X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FFeatureSettings.java;h=e2c86a0c0bebfe748849fcfa771552d8f95c4cf0;hb=ad15cff29620f960119f80176f1fd443da9f6763;hp=fb2c04e8d10946254fd3219a0333ee606423ea8b;hpb=a45774ee31d9f35d4eff46d54d7deab719afb092;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/FeatureSettings.java b/src/jalview/schemabinding/version2/FeatureSettings.java
index fb2c04e..e2c86a0 100644
--- a/src/jalview/schemabinding/version2/FeatureSettings.java
+++ b/src/jalview/schemabinding/version2/FeatureSettings.java
@@ -1,32 +1,30 @@
-/*******************************************************************************
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
- * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
- *
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
+ * 
  * This file is part of Jalview.
- *
+ * 
  * Jalview is free software: you can redistribute it and/or
  * modify it under the terms of the GNU General Public License 
- * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
- *
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *  
  * Jalview is distributed in the hope that it will be useful, but 
  * WITHOUT ANY WARRANTY; without even the implied warranty 
  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
  * PURPOSE.  See the GNU General Public License for more details.
- *
- * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
- *******************************************************************************/
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
+ * 
+ * You should have received a copy of the GNU General Public License
+ * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
  */
-
 package jalview.schemabinding.version2;
 
-  //---------------------------------/
- //- Imported classes and packages -/
 //---------------------------------/
+//- Imported classes and packages -/
+//---------------------------------/
+
+import jalview.util.MessageManager;
 
 import org.exolab.castor.xml.Marshaller;
 import org.exolab.castor.xml.Unmarshaller;
@@ -36,414 +34,454 @@ import org.exolab.castor.xml.Unmarshaller;
  * 
  * @version $Revision$ $Date$
  */
-public class FeatureSettings implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _settingList.
-     */
-    private java.util.Vector _settingList;
-
-    /**
-     * Field _groupList.
-     */
-    private java.util.Vector _groupList;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public FeatureSettings() {
-        super();
-        this._settingList = new java.util.Vector();
-        this._groupList = new java.util.Vector();
-    }
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * 
-     * 
-     * @param vGroup
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void addGroup(
-            final jalview.schemabinding.version2.Group vGroup)
-    throws java.lang.IndexOutOfBoundsException {
-        this._groupList.addElement(vGroup);
+public class FeatureSettings implements java.io.Serializable
+{
+
+  // --------------------------/
+  // - Class/Member Variables -/
+  // --------------------------/
+
+  /**
+   * Field _settingList.
+   */
+  private java.util.Vector _settingList;
+
+  /**
+   * Field _groupList.
+   */
+  private java.util.Vector _groupList;
+
+  // ----------------/
+  // - Constructors -/
+  // ----------------/
+
+  public FeatureSettings()
+  {
+    super();
+    this._settingList = new java.util.Vector();
+    this._groupList = new java.util.Vector();
+  }
+
+  // -----------/
+  // - Methods -/
+  // -----------/
+
+  /**
+   * 
+   * 
+   * @param vGroup
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addGroup(final jalview.schemabinding.version2.Group vGroup)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    this._groupList.addElement(vGroup);
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vGroup
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addGroup(final int index,
+          final jalview.schemabinding.version2.Group vGroup)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    this._groupList.add(index, vGroup);
+  }
+
+  /**
+   * 
+   * 
+   * @param vSetting
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addSetting(
+          final jalview.schemabinding.version2.Setting vSetting)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    this._settingList.addElement(vSetting);
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vSetting
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void addSetting(final int index,
+          final jalview.schemabinding.version2.Setting vSetting)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    this._settingList.add(index, vSetting);
+  }
+
+  /**
+   * Method enumerateGroup.
+   * 
+   * @return an Enumeration over all jalview.schemabinding.version2.Group
+   *         elements
+   */
+  public java.util.Enumeration enumerateGroup()
+  {
+    return this._groupList.elements();
+  }
+
+  /**
+   * Method enumerateSetting.
+   * 
+   * @return an Enumeration over all jalview.schemabinding.version2.Setting
+   *         elements
+   */
+  public java.util.Enumeration enumerateSetting()
+  {
+    return this._settingList.elements();
+  }
+
+  /**
+   * Method getGroup.
+   * 
+   * @param index
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   * @return the value of the jalview.schemabinding.version2.Group at the given
+   *         index
+   */
+  public jalview.schemabinding.version2.Group getGroup(final int index)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._groupList.size())
+    {
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "getGroup",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._groupList.size() - 1)).toString()
+          })); 
     }
 
-    /**
-     * 
-     * 
-     * @param index
-     * @param vGroup
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void addGroup(
-            final int index,
-            final jalview.schemabinding.version2.Group vGroup)
-    throws java.lang.IndexOutOfBoundsException {
-        this._groupList.add(index, vGroup);
-    }
-
-    /**
-     * 
-     * 
-     * @param vSetting
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void addSetting(
-            final jalview.schemabinding.version2.Setting vSetting)
-    throws java.lang.IndexOutOfBoundsException {
-        this._settingList.addElement(vSetting);
-    }
-
-    /**
-     * 
-     * 
-     * @param index
-     * @param vSetting
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void addSetting(
-            final int index,
-            final jalview.schemabinding.version2.Setting vSetting)
-    throws java.lang.IndexOutOfBoundsException {
-        this._settingList.add(index, vSetting);
-    }
-
-    /**
-     * Method enumerateGroup.
-     * 
-     * @return an Enumeration over all
-     * jalview.schemabinding.version2.Group elements
-     */
-    public java.util.Enumeration enumerateGroup(
-    ) {
-        return this._groupList.elements();
-    }
-
-    /**
-     * Method enumerateSetting.
-     * 
-     * @return an Enumeration over all
-     * jalview.schemabinding.version2.Setting elements
-     */
-    public java.util.Enumeration enumerateSetting(
-    ) {
-        return this._settingList.elements();
+    return (jalview.schemabinding.version2.Group) _groupList.get(index);
+  }
+
+  /**
+   * Method getGroup.Returns the contents of the collection in an Array.
+   * <p>
+   * Note: Just in case the collection contents are changing in another thread,
+   * we pass a 0-length Array of the correct type into the API call. This way we
+   * <i>know</i> that the Array returned is of exactly the correct length.
+   * 
+   * @return this collection as an Array
+   */
+  public jalview.schemabinding.version2.Group[] getGroup()
+  {
+    jalview.schemabinding.version2.Group[] array = new jalview.schemabinding.version2.Group[0];
+    return (jalview.schemabinding.version2.Group[]) this._groupList
+            .toArray(array);
+  }
+
+  /**
+   * Method getGroupCount.
+   * 
+   * @return the size of this collection
+   */
+  public int getGroupCount()
+  {
+    return this._groupList.size();
+  }
+
+  /**
+   * Method getSetting.
+   * 
+   * @param index
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   * @return the value of the jalview.schemabinding.version2.Setting at the
+   *         given index
+   */
+  public jalview.schemabinding.version2.Setting getSetting(final int index)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._settingList.size())
+    {
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "getSetting",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._settingList.size() - 1)).toString()
+        })); 
     }
 
-    /**
-     * Method getGroup.
-     * 
-     * @param index
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     * @return the value of the
-     * jalview.schemabinding.version2.Group at the given index
-     */
-    public jalview.schemabinding.version2.Group getGroup(
-            final int index)
-    throws java.lang.IndexOutOfBoundsException {
-        // check bounds for index
-        if (index < 0 || index >= this._groupList.size()) {
-            throw new IndexOutOfBoundsException("getGroup: Index value '" + index + "' not in range [0.." + (this._groupList.size() - 1) + "]");
-        }
-        
-        return (jalview.schemabinding.version2.Group) _groupList.get(index);
+    return (jalview.schemabinding.version2.Setting) _settingList.get(index);
+  }
+
+  /**
+   * Method getSetting.Returns the contents of the collection in an Array.
+   * <p>
+   * Note: Just in case the collection contents are changing in another thread,
+   * we pass a 0-length Array of the correct type into the API call. This way we
+   * <i>know</i> that the Array returned is of exactly the correct length.
+   * 
+   * @return this collection as an Array
+   */
+  public jalview.schemabinding.version2.Setting[] getSetting()
+  {
+    jalview.schemabinding.version2.Setting[] array = new jalview.schemabinding.version2.Setting[0];
+    return (jalview.schemabinding.version2.Setting[]) this._settingList
+            .toArray(array);
+  }
+
+  /**
+   * Method getSettingCount.
+   * 
+   * @return the size of this collection
+   */
+  public int getSettingCount()
+  {
+    return this._settingList.size();
+  }
+
+  /**
+   * Method isValid.
+   * 
+   * @return true if this object is valid according to the schema
+   */
+  public boolean isValid()
+  {
+    try
+    {
+      validate();
+    } catch (org.exolab.castor.xml.ValidationException vex)
+    {
+      return false;
     }
-
-    /**
-     * Method getGroup.Returns the contents of the collection in an
-     * Array.  <p>Note:  Just in case the collection contents are
-     * changing in another thread, we pass a 0-length Array of the
-     * correct type into the API call.  This way we <i>know</i>
-     * that the Array returned is of exactly the correct length.
-     * 
-     * @return this collection as an Array
+    return true;
+  }
+
+  /**
+   * 
+   * 
+   * @param out
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void marshal(final java.io.Writer out)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, out);
+  }
+
+  /**
+   * 
+   * 
+   * @param handler
+   * @throws java.io.IOException
+   *           if an IOException occurs during marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   */
+  public void marshal(final org.xml.sax.ContentHandler handler)
+          throws java.io.IOException,
+          org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    Marshaller.marshal(this, handler);
+  }
+
+  /**
      */
-    public jalview.schemabinding.version2.Group[] getGroup(
-    ) {
-        jalview.schemabinding.version2.Group[] array = new jalview.schemabinding.version2.Group[0];
-        return (jalview.schemabinding.version2.Group[]) this._groupList.toArray(array);
-    }
+  public void removeAllGroup()
+  {
+    this._groupList.clear();
+  }
 
-    /**
-     * Method getGroupCount.
-     * 
-     * @return the size of this collection
+  /**
      */
-    public int getGroupCount(
-    ) {
-        return this._groupList.size();
+  public void removeAllSetting()
+  {
+    this._settingList.clear();
+  }
+
+  /**
+   * Method removeGroup.
+   * 
+   * @param vGroup
+   * @return true if the object was removed from the collection.
+   */
+  public boolean removeGroup(
+          final jalview.schemabinding.version2.Group vGroup)
+  {
+    boolean removed = _groupList.remove(vGroup);
+    return removed;
+  }
+
+  /**
+   * Method removeGroupAt.
+   * 
+   * @param index
+   * @return the element removed from the collection
+   */
+  public jalview.schemabinding.version2.Group removeGroupAt(final int index)
+  {
+    java.lang.Object obj = this._groupList.remove(index);
+    return (jalview.schemabinding.version2.Group) obj;
+  }
+
+  /**
+   * Method removeSetting.
+   * 
+   * @param vSetting
+   * @return true if the object was removed from the collection.
+   */
+  public boolean removeSetting(
+          final jalview.schemabinding.version2.Setting vSetting)
+  {
+    boolean removed = _settingList.remove(vSetting);
+    return removed;
+  }
+
+  /**
+   * Method removeSettingAt.
+   * 
+   * @param index
+   * @return the element removed from the collection
+   */
+  public jalview.schemabinding.version2.Setting removeSettingAt(
+          final int index)
+  {
+    java.lang.Object obj = this._settingList.remove(index);
+    return (jalview.schemabinding.version2.Setting) obj;
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vGroup
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void setGroup(final int index,
+          final jalview.schemabinding.version2.Group vGroup)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._groupList.size())
+    {
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+        		  "setGroup",
+        		  Integer.valueOf(index).toString(),
+        		  Integer.valueOf((this._groupList.size() - 1)).toString()
+          })); 
     }
 
-    /**
-     * Method getSetting.
-     * 
-     * @param index
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     * @return the value of the
-     * jalview.schemabinding.version2.Setting at the given index
-     */
-    public jalview.schemabinding.version2.Setting getSetting(
-            final int index)
-    throws java.lang.IndexOutOfBoundsException {
-        // check bounds for index
-        if (index < 0 || index >= this._settingList.size()) {
-            throw new IndexOutOfBoundsException("getSetting: Index value '" + index + "' not in range [0.." + (this._settingList.size() - 1) + "]");
-        }
-        
-        return (jalview.schemabinding.version2.Setting) _settingList.get(index);
+    this._groupList.set(index, vGroup);
+  }
+
+  /**
+   * 
+   * 
+   * @param vGroupArray
+   */
+  public void setGroup(
+          final jalview.schemabinding.version2.Group[] vGroupArray)
+  {
+    // -- copy array
+    _groupList.clear();
+
+    for (int i = 0; i < vGroupArray.length; i++)
+    {
+      this._groupList.add(vGroupArray[i]);
     }
-
-    /**
-     * Method getSetting.Returns the contents of the collection in
-     * an Array.  <p>Note:  Just in case the collection contents
-     * are changing in another thread, we pass a 0-length Array of
-     * the correct type into the API call.  This way we <i>know</i>
-     * that the Array returned is of exactly the correct length.
-     * 
-     * @return this collection as an Array
-     */
-    public jalview.schemabinding.version2.Setting[] getSetting(
-    ) {
-        jalview.schemabinding.version2.Setting[] array = new jalview.schemabinding.version2.Setting[0];
-        return (jalview.schemabinding.version2.Setting[]) this._settingList.toArray(array);
-    }
-
-    /**
-     * Method getSettingCount.
-     * 
-     * @return the size of this collection
-     */
-    public int getSettingCount(
-    ) {
-        return this._settingList.size();
+  }
+
+  /**
+   * 
+   * 
+   * @param index
+   * @param vSetting
+   * @throws java.lang.IndexOutOfBoundsException
+   *           if the index given is outside the bounds of the collection
+   */
+  public void setSetting(final int index,
+          final jalview.schemabinding.version2.Setting vSetting)
+          throws java.lang.IndexOutOfBoundsException
+  {
+    // check bounds for index
+    if (index < 0 || index >= this._settingList.size())
+    {
+        throw new IndexOutOfBoundsException(MessageManager.formatMessage("exception.index_value_not_in_range", new String[]{
+      		  "setSetting",
+      		  Integer.valueOf(index).toString(),
+      		  Integer.valueOf((this._settingList.size() - 1)).toString()
+        })); 
     }
 
-    /**
-     * Method isValid.
-     * 
-     * @return true if this object is valid according to the schema
-     */
-    public boolean isValid(
-    ) {
-        try {
-            validate();
-        } catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    }
-
-    /**
-     * 
-     * 
-     * @param out
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     */
-    public void marshal(
-            final java.io.Writer out)
-    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, out);
-    }
-
-    /**
-     * 
-     * 
-     * @param handler
-     * @throws java.io.IOException if an IOException occurs during
-     * marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     */
-    public void marshal(
-            final org.xml.sax.ContentHandler handler)
-    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, handler);
-    }
-
-    /**
-     */
-    public void removeAllGroup(
-    ) {
-        this._groupList.clear();
-    }
-
-    /**
-     */
-    public void removeAllSetting(
-    ) {
-        this._settingList.clear();
-    }
-
-    /**
-     * Method removeGroup.
-     * 
-     * @param vGroup
-     * @return true if the object was removed from the collection.
-     */
-    public boolean removeGroup(
-            final jalview.schemabinding.version2.Group vGroup) {
-        boolean removed = _groupList.remove(vGroup);
-        return removed;
-    }
-
-    /**
-     * Method removeGroupAt.
-     * 
-     * @param index
-     * @return the element removed from the collection
-     */
-    public jalview.schemabinding.version2.Group removeGroupAt(
-            final int index) {
-        java.lang.Object obj = this._groupList.remove(index);
-        return (jalview.schemabinding.version2.Group) obj;
-    }
-
-    /**
-     * Method removeSetting.
-     * 
-     * @param vSetting
-     * @return true if the object was removed from the collection.
-     */
-    public boolean removeSetting(
-            final jalview.schemabinding.version2.Setting vSetting) {
-        boolean removed = _settingList.remove(vSetting);
-        return removed;
-    }
-
-    /**
-     * Method removeSettingAt.
-     * 
-     * @param index
-     * @return the element removed from the collection
-     */
-    public jalview.schemabinding.version2.Setting removeSettingAt(
-            final int index) {
-        java.lang.Object obj = this._settingList.remove(index);
-        return (jalview.schemabinding.version2.Setting) obj;
-    }
-
-    /**
-     * 
-     * 
-     * @param index
-     * @param vGroup
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void setGroup(
-            final int index,
-            final jalview.schemabinding.version2.Group vGroup)
-    throws java.lang.IndexOutOfBoundsException {
-        // check bounds for index
-        if (index < 0 || index >= this._groupList.size()) {
-            throw new IndexOutOfBoundsException("setGroup: Index value '" + index + "' not in range [0.." + (this._groupList.size() - 1) + "]");
-        }
-        
-        this._groupList.set(index, vGroup);
-    }
-
-    /**
-     * 
-     * 
-     * @param vGroupArray
-     */
-    public void setGroup(
-            final jalview.schemabinding.version2.Group[] vGroupArray) {
-        //-- copy array
-        _groupList.clear();
-        
-        for (int i = 0; i < vGroupArray.length; i++) {
-                this._groupList.add(vGroupArray[i]);
-        }
-    }
-
-    /**
-     * 
-     * 
-     * @param index
-     * @param vSetting
-     * @throws java.lang.IndexOutOfBoundsException if the index
-     * given is outside the bounds of the collection
-     */
-    public void setSetting(
-            final int index,
-            final jalview.schemabinding.version2.Setting vSetting)
-    throws java.lang.IndexOutOfBoundsException {
-        // check bounds for index
-        if (index < 0 || index >= this._settingList.size()) {
-            throw new IndexOutOfBoundsException("setSetting: Index value '" + index + "' not in range [0.." + (this._settingList.size() - 1) + "]");
-        }
-        
-        this._settingList.set(index, vSetting);
-    }
-
-    /**
-     * 
-     * 
-     * @param vSettingArray
-     */
-    public void setSetting(
-            final jalview.schemabinding.version2.Setting[] vSettingArray) {
-        //-- copy array
-        _settingList.clear();
-        
-        for (int i = 0; i < vSettingArray.length; i++) {
-                this._settingList.add(vSettingArray[i]);
-        }
-    }
-
-    /**
-     * Method unmarshal.
-     * 
-     * @param reader
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     * @return the unmarshaled
-     * jalview.schemabinding.version2.FeatureSettings
-     */
-    public static jalview.schemabinding.version2.FeatureSettings unmarshal(
-            final java.io.Reader reader)
-    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        return (jalview.schemabinding.version2.FeatureSettings) Unmarshaller.unmarshal(jalview.schemabinding.version2.FeatureSettings.class, reader);
-    }
-
-    /**
-     * 
-     * 
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     */
-    public void validate(
-    )
-    throws org.exolab.castor.xml.ValidationException {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
+    this._settingList.set(index, vSetting);
+  }
+
+  /**
+   * 
+   * 
+   * @param vSettingArray
+   */
+  public void setSetting(
+          final jalview.schemabinding.version2.Setting[] vSettingArray)
+  {
+    // -- copy array
+    _settingList.clear();
+
+    for (int i = 0; i < vSettingArray.length; i++)
+    {
+      this._settingList.add(vSettingArray[i]);
     }
+  }
+
+  /**
+   * Method unmarshal.
+   * 
+   * @param reader
+   * @throws org.exolab.castor.xml.MarshalException
+   *           if object is null or if any SAXException is thrown during
+   *           marshaling
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   * @return the unmarshaled jalview.schemabinding.version2.FeatureSettings
+   */
+  public static jalview.schemabinding.version2.FeatureSettings unmarshal(
+          final java.io.Reader reader)
+          throws org.exolab.castor.xml.MarshalException,
+          org.exolab.castor.xml.ValidationException
+  {
+    return (jalview.schemabinding.version2.FeatureSettings) Unmarshaller
+            .unmarshal(
+                    jalview.schemabinding.version2.FeatureSettings.class,
+                    reader);
+  }
+
+  /**
+   * 
+   * 
+   * @throws org.exolab.castor.xml.ValidationException
+   *           if this object is an invalid instance according to the schema
+   */
+  public void validate() throws org.exolab.castor.xml.ValidationException
+  {
+    org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+    validator.validate(this);
+  }
 
 }