X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FJSeqDescriptor.java;h=9280390bf394524087f16ba37f84db06d99fad4c;hb=7bc226b58110fa26d9dbd3f0c78095d06909ffc3;hp=eef74d207b912c538670ee9126609e37d7c58117;hpb=dd74fc4938723fe5ec48d4e5fdcfbe58ac42a48d;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/JSeqDescriptor.java b/src/jalview/schemabinding/version2/JSeqDescriptor.java
index eef74d2..9280390 100755
--- a/src/jalview/schemabinding/version2/JSeqDescriptor.java
+++ b/src/jalview/schemabinding/version2/JSeqDescriptor.java
@@ -1,5 +1,5 @@
 /*
- * This class was automatically generated with 
+ * This class was automatically generated with
  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
  * Schema.
  * $Id$
@@ -7,482 +7,566 @@
 
 package jalview.schemabinding.version2;
 
-  //---------------------------------/
- //- Imported classes and packages -/
+//---------------------------------/
+//- Imported classes and packages -/
 //---------------------------------/
 
-import org.exolab.castor.mapping.AccessMode;
-import org.exolab.castor.xml.TypeValidator;
-import org.exolab.castor.xml.XMLFieldDescriptor;
 import org.exolab.castor.xml.validators.*;
 
 /**
  * Class JSeqDescriptor.
- * 
+ *
  * @version $Revision$ $Date$
  */
-public class JSeqDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field nsPrefix
-     */
-    private java.lang.String nsPrefix;
-
-    /**
-     * Field nsURI
-     */
-    private java.lang.String nsURI;
-
-    /**
-     * Field xmlName
-     */
-    private java.lang.String xmlName;
-
-    /**
-     * Field identity
-     */
-    private org.exolab.castor.xml.XMLFieldDescriptor identity;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public JSeqDescriptor() {
-        super();
-        nsURI = "www.jalview.org";
-        xmlName = "JSeq";
-        
-        //-- set grouping compositor
-        setCompositorAsSequence();
-        org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
-        org.exolab.castor.xml.XMLFieldHandler              handler        = null;
-        org.exolab.castor.xml.FieldValidator               fieldValidator = null;
-        //-- initialize attribute descriptors
-        
-        //-- _colour
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                JSeq target = (JSeq) object;
-                if(!target.hasColour())
-                    return null;
-                return new java.lang.Integer(target.getColour());
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    JSeq target = (JSeq) object;
-                    // if null, use delete method for optional primitives 
-                    if (value == null) {
-                        target.deleteColour();
-                        return;
-                    }
-                    target.setColour( ((java.lang.Integer)value).intValue());
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return null;
-            }
-        } );
-        desc.setHandler(handler);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _colour
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        { //-- local scope
-            IntegerValidator typeValidator= new IntegerValidator();
-            fieldValidator.setValidator(typeValidator);
+public class JSeqDescriptor
+    extends org.exolab.castor.xml.util.XMLClassDescriptorImpl
+{
+
+  //--------------------------/
+  //- Class/Member Variables -/
+  //--------------------------/
+
+  /**
+   * Field nsPrefix
+   */
+  private java.lang.String nsPrefix;
+
+  /**
+   * Field nsURI
+   */
+  private java.lang.String nsURI;
+
+  /**
+   * Field xmlName
+   */
+  private java.lang.String xmlName;
+
+  /**
+   * Field identity
+   */
+  private org.exolab.castor.xml.XMLFieldDescriptor identity;
+
+  //----------------/
+  //- Constructors -/
+  //----------------/
+
+  public JSeqDescriptor()
+  {
+    super();
+    nsURI = "www.jalview.org";
+    xmlName = "JSeq";
+
+    //-- set grouping compositor
+    setCompositorAsSequence();
+    org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
+    org.exolab.castor.xml.XMLFieldHandler handler = null;
+    org.exolab.castor.xml.FieldValidator fieldValidator = null;
+    //-- initialize attribute descriptors
+
+    //-- _colour
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.
+        Integer.TYPE, "_colour", "colour",
+        org.exolab.castor.xml.NodeType.Attribute);
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+          throws IllegalStateException
+      {
+        JSeq target = (JSeq) object;
+        if (!target.hasColour())
+        {
+          return null;
         }
-        desc.setValidator(fieldValidator);
-        //-- _start
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_start", "start", org.exolab.castor.xml.NodeType.Attribute);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                JSeq target = (JSeq) object;
-                if(!target.hasStart())
-                    return null;
-                return new java.lang.Integer(target.getStart());
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    JSeq target = (JSeq) object;
-                    // ignore null values for non optional primitives
-                    if (value == null) return;
-                    
-                    target.setStart( ((java.lang.Integer)value).intValue());
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return null;
-            }
-        } );
-        desc.setHandler(handler);
-        desc.setRequired(true);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _start
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        fieldValidator.setMinOccurs(1);
-        { //-- local scope
-            IntegerValidator typeValidator= new IntegerValidator();
-            fieldValidator.setValidator(typeValidator);
+        return new java.lang.Integer(target.getColour());
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+          throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          JSeq target = (JSeq) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteColour();
+            return;
+          }
+          target.setColour( ( (java.lang.Integer) value).intValue());
         }
-        desc.setValidator(fieldValidator);
-        //-- _end
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                JSeq target = (JSeq) object;
-                if(!target.hasEnd())
-                    return null;
-                return new java.lang.Integer(target.getEnd());
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    JSeq target = (JSeq) object;
-                    // ignore null values for non optional primitives
-                    if (value == null) return;
-                    
-                    target.setEnd( ((java.lang.Integer)value).intValue());
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return null;
-            }
-        } );
-        desc.setHandler(handler);
-        desc.setRequired(true);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _end
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        fieldValidator.setMinOccurs(1);
-        { //-- local scope
-            IntegerValidator typeValidator= new IntegerValidator();
-            fieldValidator.setValidator(typeValidator);
+        catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
         }
-        desc.setValidator(fieldValidator);
-        //-- _id
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                JSeq target = (JSeq) object;
-                if(!target.hasId())
-                    return null;
-                return new java.lang.Integer(target.getId());
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    JSeq target = (JSeq) object;
-                    // ignore null values for non optional primitives
-                    if (value == null) return;
-                    
-                    target.setId( ((java.lang.Integer)value).intValue());
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return null;
-            }
-        } );
-        desc.setHandler(handler);
-        desc.setRequired(true);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _id
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        fieldValidator.setMinOccurs(1);
-        { //-- local scope
-            IntegerValidator typeValidator= new IntegerValidator();
-            fieldValidator.setValidator(typeValidator);
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    });
+    desc.setHandler(handler);
+    addFieldDescriptor(desc);
+
+    //-- validation code for: _colour
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { //-- local scope
+      IntegerValidator typeValidator = new IntegerValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    //-- _start
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.
+        Integer.TYPE, "_start", "start",
+        org.exolab.castor.xml.NodeType.Attribute);
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+          throws IllegalStateException
+      {
+        JSeq target = (JSeq) object;
+        if (!target.hasStart())
+        {
+          return null;
+        }
+        return new java.lang.Integer(target.getStart());
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+          throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          JSeq target = (JSeq) object;
+          // ignore null values for non optional primitives
+          if (value == null)
+          {
+            return;
+          }
+
+          target.setStart( ( (java.lang.Integer) value).intValue());
         }
-        desc.setValidator(fieldValidator);
-        //-- _hidden
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_hidden", "hidden", org.exolab.castor.xml.NodeType.Attribute);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                JSeq target = (JSeq) object;
-                if(!target.hasHidden())
-                    return null;
-                return (target.getHidden() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    JSeq target = (JSeq) object;
-                    // if null, use delete method for optional primitives 
-                    if (value == null) {
-                        target.deleteHidden();
-                        return;
-                    }
-                    target.setHidden( ((java.lang.Boolean)value).booleanValue());
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return null;
-            }
-        } );
-        desc.setHandler(handler);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _hidden
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        { //-- local scope
-            BooleanValidator typeValidator = new BooleanValidator();
-            fieldValidator.setValidator(typeValidator);
+        catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
         }
-        desc.setValidator(fieldValidator);
-        //-- initialize element descriptors
-        
-        //-- _featuresList
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Features.class, "_featuresList", "features", org.exolab.castor.xml.NodeType.Element);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                JSeq target = (JSeq) object;
-                return target.getFeatures();
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    JSeq target = (JSeq) object;
-                    target.addFeatures( (jalview.schemabinding.version2.Features) value);
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return new jalview.schemabinding.version2.Features();
-            }
-        } );
-        desc.setHandler(handler);
-        desc.setNameSpaceURI("www.jalview.org");
-        desc.setMultivalued(true);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _featuresList
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        fieldValidator.setMinOccurs(0);
-        { //-- local scope
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    });
+    desc.setHandler(handler);
+    desc.setRequired(true);
+    addFieldDescriptor(desc);
+
+    //-- validation code for: _start
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(1);
+    { //-- local scope
+      IntegerValidator typeValidator = new IntegerValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    //-- _end
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.
+        Integer.TYPE, "_end", "end", org.exolab.castor.xml.NodeType.Attribute);
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()
+    {
+      public java.lang.Object getValue(java.lang.Object object)
+          throws IllegalStateException
+      {
+        JSeq target = (JSeq) object;
+        if (!target.hasEnd())
+        {
+          return null;
         }
-        desc.setValidator(fieldValidator);
-        //-- _pdbidsList
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Pdbids.class, "_pdbidsList", "pdbids", org.exolab.castor.xml.NodeType.Element);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                JSeq target = (JSeq) object;
-                return target.getPdbids();
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    JSeq target = (JSeq) object;
-                    target.addPdbids( (jalview.schemabinding.version2.Pdbids) value);
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return new jalview.schemabinding.version2.Pdbids();
-            }
-        } );
-        desc.setHandler(handler);
-        desc.setNameSpaceURI("www.jalview.org");
-        desc.setMultivalued(true);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _pdbidsList
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        fieldValidator.setMinOccurs(0);
-        { //-- local scope
+        return new java.lang.Integer(target.getEnd());
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+          throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          JSeq target = (JSeq) object;
+          // ignore null values for non optional primitives
+          if (value == null)
+          {
+            return;
+          }
+
+          target.setEnd( ( (java.lang.Integer) value).intValue());
         }
-        desc.setValidator(fieldValidator);
-        //-- _hiddenSequencesList
-        desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_hiddenSequencesList", "hiddenSequences", org.exolab.castor.xml.NodeType.Element);
-        handler = (new org.exolab.castor.xml.XMLFieldHandler() {
-            public java.lang.Object getValue( java.lang.Object object ) 
-                throws IllegalStateException
-            {
-                JSeq target = (JSeq) object;
-                return target.getHiddenSequences();
-            }
-            public void setValue( java.lang.Object object, java.lang.Object value) 
-                throws IllegalStateException, IllegalArgumentException
-            {
-                try {
-                    JSeq target = (JSeq) object;
-                    // ignore null values for non optional primitives
-                    if (value == null) return;
-                    
-                    target.addHiddenSequences( ((java.lang.Integer)value).intValue());
-                }
-                catch (java.lang.Exception ex) {
-                    throw new IllegalStateException(ex.toString());
-                }
-            }
-            public java.lang.Object newInstance( java.lang.Object parent ) {
-                return null;
-            }
-        } );
-        desc.setHandler(handler);
-        desc.setNameSpaceURI("www.jalview.org");
-        desc.setMultivalued(true);
-        addFieldDescriptor(desc);
-        
-        //-- validation code for: _hiddenSequencesList
-        fieldValidator = new org.exolab.castor.xml.FieldValidator();
-        fieldValidator.setMinOccurs(0);
-        { //-- local scope
-            IntegerValidator typeValidator= new IntegerValidator();
-            fieldValidator.setValidator(typeValidator);
+        catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
         }
-        desc.setValidator(fieldValidator);
-    } //-- jalview.schemabinding.version2.JSeqDescriptor()
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Method getAccessMode
-     * 
-     * 
-     * 
-     * @return AccessMode
-     */
-    public org.exolab.castor.mapping.AccessMode getAccessMode()
-    {
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
         return null;
-    } //-- org.exolab.castor.mapping.AccessMode getAccessMode() 
-
-    /**
-     * Method getExtends
-     * 
-     * 
-     * 
-     * @return ClassDescriptor
-     */
-    public org.exolab.castor.mapping.ClassDescriptor getExtends()
+      }
+    });
+    desc.setHandler(handler);
+    desc.setRequired(true);
+    addFieldDescriptor(desc);
+
+    //-- validation code for: _end
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(1);
+    { //-- local scope
+      IntegerValidator typeValidator = new IntegerValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    //-- _id
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.
+        Integer.TYPE, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()
     {
+      public java.lang.Object getValue(java.lang.Object object)
+          throws IllegalStateException
+      {
+        JSeq target = (JSeq) object;
+        if (!target.hasId())
+        {
+          return null;
+        }
+        return new java.lang.Integer(target.getId());
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+          throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          JSeq target = (JSeq) object;
+          // ignore null values for non optional primitives
+          if (value == null)
+          {
+            return;
+          }
+
+          target.setId( ( (java.lang.Integer) value).intValue());
+        }
+        catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
         return null;
-    } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() 
-
-    /**
-     * Method getIdentity
-     * 
-     * 
-     * 
-     * @return FieldDescriptor
-     */
-    public org.exolab.castor.mapping.FieldDescriptor getIdentity()
-    {
-        return identity;
-    } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() 
-
-    /**
-     * Method getJavaClass
-     * 
-     * 
-     * 
-     * @return Class
-     */
-    public java.lang.Class getJavaClass()
-    {
-        return jalview.schemabinding.version2.JSeq.class;
-    } //-- java.lang.Class getJavaClass() 
-
-    /**
-     * Method getNameSpacePrefix
-     * 
-     * 
-     * 
-     * @return String
-     */
-    public java.lang.String getNameSpacePrefix()
+      }
+    });
+    desc.setHandler(handler);
+    desc.setRequired(true);
+    addFieldDescriptor(desc);
+
+    //-- validation code for: _id
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(1);
+    { //-- local scope
+      IntegerValidator typeValidator = new IntegerValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    //-- _hidden
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.
+        Boolean.TYPE, "_hidden", "hidden",
+        org.exolab.castor.xml.NodeType.Attribute);
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()
     {
-        return nsPrefix;
-    } //-- java.lang.String getNameSpacePrefix() 
-
-    /**
-     * Method getNameSpaceURI
-     * 
-     * 
-     * 
-     * @return String
-     */
-    public java.lang.String getNameSpaceURI()
+      public java.lang.Object getValue(java.lang.Object object)
+          throws IllegalStateException
+      {
+        JSeq target = (JSeq) object;
+        if (!target.hasHidden())
+        {
+          return null;
+        }
+        return (target.getHidden() ? java.lang.Boolean.TRUE :
+                java.lang.Boolean.FALSE);
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+          throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          JSeq target = (JSeq) object;
+          // if null, use delete method for optional primitives
+          if (value == null)
+          {
+            target.deleteHidden();
+            return;
+          }
+          target.setHidden( ( (java.lang.Boolean) value).booleanValue());
+        }
+        catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    });
+    desc.setHandler(handler);
+    addFieldDescriptor(desc);
+
+    //-- validation code for: _hidden
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    { //-- local scope
+      BooleanValidator typeValidator = new BooleanValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+    //-- initialize element descriptors
+
+    //-- _featuresList
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.
+        schemabinding.version2.Features.class, "_featuresList", "features",
+        org.exolab.castor.xml.NodeType.Element);
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()
     {
-        return nsURI;
-    } //-- java.lang.String getNameSpaceURI() 
-
-    /**
-     * Method getValidator
-     * 
-     * 
-     * 
-     * @return TypeValidator
-     */
-    public org.exolab.castor.xml.TypeValidator getValidator()
+      public java.lang.Object getValue(java.lang.Object object)
+          throws IllegalStateException
+      {
+        JSeq target = (JSeq) object;
+        return target.getFeatures();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+          throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          JSeq target = (JSeq) object;
+          target.addFeatures( (jalview.schemabinding.version2.Features) value);
+        }
+        catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return new jalview.schemabinding.version2.Features();
+      }
+    });
+    desc.setHandler(handler);
+    desc.setNameSpaceURI("www.jalview.org");
+    desc.setMultivalued(true);
+    addFieldDescriptor(desc);
+
+    //-- validation code for: _featuresList
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(0);
+    { //-- local scope
+    }
+    desc.setValidator(fieldValidator);
+    //-- _pdbidsList
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.
+        schemabinding.version2.Pdbids.class, "_pdbidsList", "pdbids",
+        org.exolab.castor.xml.NodeType.Element);
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()
     {
-        return this;
-    } //-- org.exolab.castor.xml.TypeValidator getValidator() 
-
-    /**
-     * Method getXMLName
-     * 
-     * 
-     * 
-     * @return String
-     */
-    public java.lang.String getXMLName()
+      public java.lang.Object getValue(java.lang.Object object)
+          throws IllegalStateException
+      {
+        JSeq target = (JSeq) object;
+        return target.getPdbids();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+          throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          JSeq target = (JSeq) object;
+          target.addPdbids( (jalview.schemabinding.version2.Pdbids) value);
+        }
+        catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return new jalview.schemabinding.version2.Pdbids();
+      }
+    });
+    desc.setHandler(handler);
+    desc.setNameSpaceURI("www.jalview.org");
+    desc.setMultivalued(true);
+    addFieldDescriptor(desc);
+
+    //-- validation code for: _pdbidsList
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(0);
+    { //-- local scope
+    }
+    desc.setValidator(fieldValidator);
+    //-- _hiddenSequencesList
+    desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.
+        Integer.TYPE, "_hiddenSequencesList", "hiddenSequences",
+        org.exolab.castor.xml.NodeType.Element);
+    handler = (new org.exolab.castor.xml.XMLFieldHandler()
     {
-        return xmlName;
-    } //-- java.lang.String getXMLName() 
+      public java.lang.Object getValue(java.lang.Object object)
+          throws IllegalStateException
+      {
+        JSeq target = (JSeq) object;
+        return target.getHiddenSequences();
+      }
+
+      public void setValue(java.lang.Object object, java.lang.Object value)
+          throws IllegalStateException, IllegalArgumentException
+      {
+        try
+        {
+          JSeq target = (JSeq) object;
+          // ignore null values for non optional primitives
+          if (value == null)
+          {
+            return;
+          }
+
+          target.addHiddenSequences( ( (java.lang.Integer) value).intValue());
+        }
+        catch (java.lang.Exception ex)
+        {
+          throw new IllegalStateException(ex.toString());
+        }
+      }
+
+      public java.lang.Object newInstance(java.lang.Object parent)
+      {
+        return null;
+      }
+    });
+    desc.setHandler(handler);
+    desc.setNameSpaceURI("www.jalview.org");
+    desc.setMultivalued(true);
+    addFieldDescriptor(desc);
+
+    //-- validation code for: _hiddenSequencesList
+    fieldValidator = new org.exolab.castor.xml.FieldValidator();
+    fieldValidator.setMinOccurs(0);
+    { //-- local scope
+      IntegerValidator typeValidator = new IntegerValidator();
+      fieldValidator.setValidator(typeValidator);
+    }
+    desc.setValidator(fieldValidator);
+  } //-- jalview.schemabinding.version2.JSeqDescriptor()
+
+  //-----------/
+  //- Methods -/
+  //-----------/
+
+  /**
+   * Method getAccessMode
+   *
+   *
+   *
+   * @return AccessMode
+   */
+  public org.exolab.castor.mapping.AccessMode getAccessMode()
+  {
+    return null;
+  } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
+
+  /**
+   * Method getExtends
+   *
+   *
+   *
+   * @return ClassDescriptor
+   */
+  public org.exolab.castor.mapping.ClassDescriptor getExtends()
+  {
+    return null;
+  } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
+
+  /**
+   * Method getIdentity
+   *
+   *
+   *
+   * @return FieldDescriptor
+   */
+  public org.exolab.castor.mapping.FieldDescriptor getIdentity()
+  {
+    return identity;
+  } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
+
+  /**
+   * Method getJavaClass
+   *
+   *
+   *
+   * @return Class
+   */
+  public java.lang.Class getJavaClass()
+  {
+    return jalview.schemabinding.version2.JSeq.class;
+  } //-- java.lang.Class getJavaClass()
+
+  /**
+   * Method getNameSpacePrefix
+   *
+   *
+   *
+   * @return String
+   */
+  public java.lang.String getNameSpacePrefix()
+  {
+    return nsPrefix;
+  } //-- java.lang.String getNameSpacePrefix()
+
+  /**
+   * Method getNameSpaceURI
+   *
+   *
+   *
+   * @return String
+   */
+  public java.lang.String getNameSpaceURI()
+  {
+    return nsURI;
+  } //-- java.lang.String getNameSpaceURI()
+
+  /**
+   * Method getValidator
+   *
+   *
+   *
+   * @return TypeValidator
+   */
+  public org.exolab.castor.xml.TypeValidator getValidator()
+  {
+    return this;
+  } //-- org.exolab.castor.xml.TypeValidator getValidator()
+
+  /**
+   * Method getXMLName
+   *
+   *
+   *
+   * @return String
+   */
+  public java.lang.String getXMLName()
+  {
+    return xmlName;
+  } //-- java.lang.String getXMLName()
 
 }