X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fschemabinding%2Fversion2%2FJalviewModel.java;h=6e6b46c5349de18987cd5c65c0c49be2d6ee2608;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=f7e049ad4e8eaa4bb7bc414b16f8199db7e5e806;hpb=a95b88b05400d7e841f9523d4c4228c678307654;p=jalview.git

diff --git a/src/jalview/schemabinding/version2/JalviewModel.java b/src/jalview/schemabinding/version2/JalviewModel.java
old mode 100755
new mode 100644
index f7e049a..6e6b46c
--- a/src/jalview/schemabinding/version2/JalviewModel.java
+++ b/src/jalview/schemabinding/version2/JalviewModel.java
@@ -1,221 +1,238 @@
-/*
- * This class was automatically generated with 
- * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
- * Schema.
- * $Id$
- */
-
-package jalview.schemabinding.version2;
-
-  //---------------------------------/
- //- Imported classes and packages -/
-//---------------------------------/
-
-import org.exolab.castor.xml.Marshaller;
-import org.exolab.castor.xml.Unmarshaller;
-
-/**
- * Class JalviewModel.
- * 
- * @version $Revision$ $Date$
- */
-public class JalviewModel implements java.io.Serializable {
-
-
-      //--------------------------/
-     //- Class/Member Variables -/
-    //--------------------------/
-
-    /**
-     * Field _creationDate.
-     */
-    private java.util.Date _creationDate;
-
-    /**
-     * Field _version.
-     */
-    private java.lang.String _version;
-
-    /**
-     * Field _vamsasModel.
-     */
-    private jalview.schemabinding.version2.VamsasModel _vamsasModel;
-
-    /**
-     * Field _jalviewModelSequence.
-     */
-    private jalview.schemabinding.version2.JalviewModelSequence _jalviewModelSequence;
-
-
-      //----------------/
-     //- Constructors -/
-    //----------------/
-
-    public JalviewModel() {
-        super();
-    }
-
-
-      //-----------/
-     //- Methods -/
-    //-----------/
-
-    /**
-     * Returns the value of field 'creationDate'.
-     * 
-     * @return the value of field 'CreationDate'.
-     */
-    public java.util.Date getCreationDate(
-    ) {
-        return this._creationDate;
-    }
-
-    /**
-     * Returns the value of field 'jalviewModelSequence'.
-     * 
-     * @return the value of field 'JalviewModelSequence'.
-     */
-    public jalview.schemabinding.version2.JalviewModelSequence getJalviewModelSequence(
-    ) {
-        return this._jalviewModelSequence;
-    }
-
-    /**
-     * Returns the value of field 'vamsasModel'.
-     * 
-     * @return the value of field 'VamsasModel'.
-     */
-    public jalview.schemabinding.version2.VamsasModel getVamsasModel(
-    ) {
-        return this._vamsasModel;
-    }
-
-    /**
-     * Returns the value of field 'version'.
-     * 
-     * @return the value of field 'Version'.
-     */
-    public java.lang.String getVersion(
-    ) {
-        return this._version;
-    }
-
-    /**
-     * Method isValid.
-     * 
-     * @return true if this object is valid according to the schema
-     */
-    public boolean isValid(
-    ) {
-        try {
-            validate();
-        } catch (org.exolab.castor.xml.ValidationException vex) {
-            return false;
-        }
-        return true;
-    }
-
-    /**
-     * 
-     * 
-     * @param out
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     */
-    public void marshal(
-            final java.io.Writer out)
-    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, out);
-    }
-
-    /**
-     * 
-     * 
-     * @param handler
-     * @throws java.io.IOException if an IOException occurs during
-     * marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     */
-    public void marshal(
-            final org.xml.sax.ContentHandler handler)
-    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        Marshaller.marshal(this, handler);
-    }
-
-    /**
-     * Sets the value of field 'creationDate'.
-     * 
-     * @param creationDate the value of field 'creationDate'.
-     */
-    public void setCreationDate(
-            final java.util.Date creationDate) {
-        this._creationDate = creationDate;
-    }
-
-    /**
-     * Sets the value of field 'jalviewModelSequence'.
-     * 
-     * @param jalviewModelSequence the value of field
-     * 'jalviewModelSequence'.
-     */
-    public void setJalviewModelSequence(
-            final jalview.schemabinding.version2.JalviewModelSequence jalviewModelSequence) {
-        this._jalviewModelSequence = jalviewModelSequence;
-    }
-
-    /**
-     * Sets the value of field 'vamsasModel'.
-     * 
-     * @param vamsasModel the value of field 'vamsasModel'.
-     */
-    public void setVamsasModel(
-            final jalview.schemabinding.version2.VamsasModel vamsasModel) {
-        this._vamsasModel = vamsasModel;
-    }
-
-    /**
-     * Sets the value of field 'version'.
-     * 
-     * @param version the value of field 'version'.
-     */
-    public void setVersion(
-            final java.lang.String version) {
-        this._version = version;
-    }
-
-    /**
-     * Method unmarshal.
-     * 
-     * @param reader
-     * @throws org.exolab.castor.xml.MarshalException if object is
-     * null or if any SAXException is thrown during marshaling
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     * @return the unmarshaled
-     * jalview.schemabinding.version2.JalviewModel
-     */
-    public static jalview.schemabinding.version2.JalviewModel unmarshal(
-            final java.io.Reader reader)
-    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
-        return (jalview.schemabinding.version2.JalviewModel) Unmarshaller.unmarshal(jalview.schemabinding.version2.JalviewModel.class, reader);
-    }
-
-    /**
-     * 
-     * 
-     * @throws org.exolab.castor.xml.ValidationException if this
-     * object is an invalid instance according to the schema
-     */
-    public void validate(
-    )
-    throws org.exolab.castor.xml.ValidationException {
-        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
-        validator.validate(this);
-    }
-
-}
+/*******************************************************************************
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ *
+ * This file is part of Jalview.
+ *
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License 
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but 
+ * WITHOUT ANY WARRANTY; without even the implied warranty 
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR 
+ * PURPOSE.  See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
+ *******************************************************************************/
+/*
+ * This class was automatically generated with 
+ * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
+ * Schema.
+ * $Id$
+ */
+
+package jalview.schemabinding.version2;
+
+  //---------------------------------/
+ //- Imported classes and packages -/
+//---------------------------------/
+
+import org.exolab.castor.xml.Marshaller;
+import org.exolab.castor.xml.Unmarshaller;
+
+/**
+ * Class JalviewModel.
+ * 
+ * @version $Revision$ $Date$
+ */
+public class JalviewModel implements java.io.Serializable {
+
+
+      //--------------------------/
+     //- Class/Member Variables -/
+    //--------------------------/
+
+    /**
+     * Field _creationDate.
+     */
+    private java.util.Date _creationDate;
+
+    /**
+     * Field _version.
+     */
+    private java.lang.String _version;
+
+    /**
+     * Field _vamsasModel.
+     */
+    private jalview.schemabinding.version2.VamsasModel _vamsasModel;
+
+    /**
+     * Field _jalviewModelSequence.
+     */
+    private jalview.schemabinding.version2.JalviewModelSequence _jalviewModelSequence;
+
+
+      //----------------/
+     //- Constructors -/
+    //----------------/
+
+    public JalviewModel() {
+        super();
+    }
+
+
+      //-----------/
+     //- Methods -/
+    //-----------/
+
+    /**
+     * Returns the value of field 'creationDate'.
+     * 
+     * @return the value of field 'CreationDate'.
+     */
+    public java.util.Date getCreationDate(
+    ) {
+        return this._creationDate;
+    }
+
+    /**
+     * Returns the value of field 'jalviewModelSequence'.
+     * 
+     * @return the value of field 'JalviewModelSequence'.
+     */
+    public jalview.schemabinding.version2.JalviewModelSequence getJalviewModelSequence(
+    ) {
+        return this._jalviewModelSequence;
+    }
+
+    /**
+     * Returns the value of field 'vamsasModel'.
+     * 
+     * @return the value of field 'VamsasModel'.
+     */
+    public jalview.schemabinding.version2.VamsasModel getVamsasModel(
+    ) {
+        return this._vamsasModel;
+    }
+
+    /**
+     * Returns the value of field 'version'.
+     * 
+     * @return the value of field 'Version'.
+     */
+    public java.lang.String getVersion(
+    ) {
+        return this._version;
+    }
+
+    /**
+     * Method isValid.
+     * 
+     * @return true if this object is valid according to the schema
+     */
+    public boolean isValid(
+    ) {
+        try {
+            validate();
+        } catch (org.exolab.castor.xml.ValidationException vex) {
+            return false;
+        }
+        return true;
+    }
+
+    /**
+     * 
+     * 
+     * @param out
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void marshal(
+            final java.io.Writer out)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, out);
+    }
+
+    /**
+     * 
+     * 
+     * @param handler
+     * @throws java.io.IOException if an IOException occurs during
+     * marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     */
+    public void marshal(
+            final org.xml.sax.ContentHandler handler)
+    throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        Marshaller.marshal(this, handler);
+    }
+
+    /**
+     * Sets the value of field 'creationDate'.
+     * 
+     * @param creationDate the value of field 'creationDate'.
+     */
+    public void setCreationDate(
+            final java.util.Date creationDate) {
+        this._creationDate = creationDate;
+    }
+
+    /**
+     * Sets the value of field 'jalviewModelSequence'.
+     * 
+     * @param jalviewModelSequence the value of field
+     * 'jalviewModelSequence'.
+     */
+    public void setJalviewModelSequence(
+            final jalview.schemabinding.version2.JalviewModelSequence jalviewModelSequence) {
+        this._jalviewModelSequence = jalviewModelSequence;
+    }
+
+    /**
+     * Sets the value of field 'vamsasModel'.
+     * 
+     * @param vamsasModel the value of field 'vamsasModel'.
+     */
+    public void setVamsasModel(
+            final jalview.schemabinding.version2.VamsasModel vamsasModel) {
+        this._vamsasModel = vamsasModel;
+    }
+
+    /**
+     * Sets the value of field 'version'.
+     * 
+     * @param version the value of field 'version'.
+     */
+    public void setVersion(
+            final java.lang.String version) {
+        this._version = version;
+    }
+
+    /**
+     * Method unmarshal.
+     * 
+     * @param reader
+     * @throws org.exolab.castor.xml.MarshalException if object is
+     * null or if any SAXException is thrown during marshaling
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     * @return the unmarshaled
+     * jalview.schemabinding.version2.JalviewModel
+     */
+    public static jalview.schemabinding.version2.JalviewModel unmarshal(
+            final java.io.Reader reader)
+    throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
+        return (jalview.schemabinding.version2.JalviewModel) Unmarshaller.unmarshal(jalview.schemabinding.version2.JalviewModel.class, reader);
+    }
+
+    /**
+     * 
+     * 
+     * @throws org.exolab.castor.xml.ValidationException if this
+     * object is an invalid instance according to the schema
+     */
+    public void validate(
+    )
+    throws org.exolab.castor.xml.ValidationException {
+        org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
+        validator.validate(this);
+    }
+
+}